Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 seq136 91.5 1e-13 seq4 89.7 5e-13 >seq2 Length=28345163 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593 || |||||| || | ||| | ||| | ||||| ||| || ||||||||||| |||||||| Sbjct 27365397 ATAGCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATC 27365456 Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 || || | ||| || | |||||| || ||| |||| || ||||||||||| || Sbjct 27365457 CGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGG 27365516 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCT 139712 || ||||| ||||| || ||| |||| | ||||| | || | || || | || | Sbjct 27365517 TGGAATGCCCTCTTTATC-CTGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTT 27365575 Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || | || | ||| ||||| |||| || |||||||| || ||||| Sbjct 27365576 CTACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627 >seq136 Length=9508 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||||||| | || |||||||||||||| ||||| || ||||||||||| ||| | || Sbjct 6189 TACCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTC-TTGAATCTTG 6131 Query 139683 G-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 | |||| | ||| | ||| || | || || || || | || | || ||||| ||| Sbjct 6130 GCCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTC 6071 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 ||| ||||||| || ||||||||| Sbjct 6070 AACATTTTTACAAAAATTTGCATA 6047 >seq4 Length=16644688 Score = 89.7 bits (98), Expect = 5e-13 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||| ||| | |||| || |||||||| |||||||||||||||||||| ||| | || Sbjct 10332664 TACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTC-CTGAATCTTC 10332722 Query 139683 G-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 | ||||| | ||| | || || | || || ||||||| || | ||||| || || Sbjct 10332723 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTT 10332782 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 || || |||||||| |||||||| Sbjct 10332783 AAAGTCTTTACGAAAATTTGCAT 10332805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496059820660800