Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq2 114 1e-20
seq136 91.5 1e-13
seq4 89.7 5e-13
>seq2
Length=28345163
Score = 114 bits (126), Expect = 1e-20
Identities = 166/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593
|| |||||| || | ||| | ||| | ||||| ||| || ||||||||||| ||||||||
Sbjct 27365397 ATAGCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATC 27365456
Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653
|| || | ||| || | |||||| || ||| |||| || ||||||||||| ||
Sbjct 27365457 CGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGG 27365516
Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCT 139712
|| ||||| ||||| || ||| |||| | ||||| | || | || || | || |
Sbjct 27365517 TGGAATGCCCTCTTTATC-CTGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTT 27365575
Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| || || | || | ||| ||||| |||| || |||||||| || |||||
Sbjct 27365576 CTACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627
>seq136
Length=9508
Score = 91.5 bits (100), Expect = 1e-13
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682
|||||||| | || |||||||||||||| ||||| || ||||||||||| ||| | ||
Sbjct 6189 TACCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTC-TTGAATCTTG 6131
Query 139683 G-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
| |||| | ||| | ||| || | || || || || | || | || ||||| |||
Sbjct 6130 GCCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTC 6071
Query 139742 AACGTTTTTACGAATATTTGCATA 139765
||| ||||||| || |||||||||
Sbjct 6070 AACATTTTTACAAAAATTTGCATA 6047
>seq4
Length=16644688
Score = 89.7 bits (98), Expect = 5e-13
Identities = 107/143 (75%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682
|||| ||| | |||| || |||||||| |||||||||||||||||||| ||| | ||
Sbjct 10332664 TACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTC-CTGAATCTTC 10332722
Query 139683 G-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
| ||||| | ||| | || || | || || ||||||| || | ||||| || ||
Sbjct 10332723 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTT 10332782
Query 139742 AACGTTTTTACGAATATTTGCAT 139764
|| || |||||||| ||||||||
Sbjct 10332783 AAAGTCTTTACGAAAATTTGCAT 10332805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496059820660800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |