Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 seq2 87.8 3e-12 >seq3 Length=25485961 Score = 111 bits (122), Expect = 2e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 79426 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 79485 || ||||| || || |||| |||||||||||||| || || || | ||||||||||||| Sbjct 17642578 AGGATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 17642637 Query 79486 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTG 79545 || ||| ||||| || | ||||||||||| ||| ||||||||||| | ||| || Sbjct 17642638 GATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCTA 17642697 Query 79546 ACTATTACTTT 79556 || |||||||| Sbjct 17642698 ACCATTACTTT 17642708 >seq2 Length=28345163 Score = 87.8 bits (96), Expect = 3e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 79426 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 79485 || ||||| | || |||| |||||||||||||| || || || | ||||||||||||| Sbjct 24879745 AGGATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 24879686 Query 79486 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 || ||| | ||| || | ||||||||||| ||| ||||||||||| | ||| Sbjct 24879685 GATCGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATT 24879630 Score = 86.0 bits (94), Expect = 9e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || || || || || |||| || |||||||| |||||||| ||||| ||| | ||||| Sbjct 24877570 CCAATACCACCCGCACTTTTTGAAATTAATGCACATCGTTTCAACGTTTCAAATATGCCT 24877511 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337 || |||||||| |||| ||| | | ||| ||| | | |||||| || ||| Sbjct 24877510 TCAATGCTATCTTCAAACATTGTCAATAGGAAAGATGAACTCATTTGTGCTTTACAAGTG 24877451 Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 80397 || |||||| | || | | || || |||||||| |||| |||| | ||||||| Sbjct 24877450 CCACTATTAAAAAGTGTTGATGTTGCATGTATAAACCATCTTTCGGACATCAAATTGTAC 24877391 Query 80398 GTCTCAA 80404 |||| || Sbjct 24877390 GTCTGAA 24877384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718262748585360