Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq3 111 2e-19
seq2 87.8 3e-12
>seq3
Length=25485961
Score = 111 bits (122), Expect = 2e-19
Identities = 103/131 (79%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 79426 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 79485
|| ||||| || || |||| |||||||||||||| || || || | |||||||||||||
Sbjct 17642578 AGGATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 17642637
Query 79486 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTG 79545
|| ||| ||||| || | ||||||||||| ||| ||||||||||| | ||| ||
Sbjct 17642638 GATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCTA 17642697
Query 79546 ACTATTACTTT 79556
|| ||||||||
Sbjct 17642698 ACCATTACTTT 17642708
>seq2
Length=28345163
Score = 87.8 bits (96), Expect = 3e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 79426 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 79485
|| ||||| | || |||| |||||||||||||| || || || | |||||||||||||
Sbjct 24879745 AGGATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 24879686
Query 79486 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541
|| ||| | ||| || | ||||||||||| ||| ||||||||||| | |||
Sbjct 24879685 GATCGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATT 24879630
Score = 86.0 bits (94), Expect = 9e-12
Identities = 131/187 (70%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277
|| || || || || |||| || |||||||| |||||||| ||||| ||| | |||||
Sbjct 24877570 CCAATACCACCCGCACTTTTTGAAATTAATGCACATCGTTTCAACGTTTCAAATATGCCT 24877511
Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337
|| |||||||| |||| ||| | | ||| ||| | | |||||| || |||
Sbjct 24877510 TCAATGCTATCTTCAAACATTGTCAATAGGAAAGATGAACTCATTTGTGCTTTACAAGTG 24877451
Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 80397
|| |||||| | || | | || || |||||||| |||| |||| | |||||||
Sbjct 24877450 CCACTATTAAAAAGTGTTGATGTTGCATGTATAAACCATCTTTCGGACATCAAATTGTAC 24877391
Query 80398 GTCTCAA 80404
|||| ||
Sbjct 24877390 GTCTGAA 24877384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718262748585360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |