Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 105 9e-18 seq2 86.0 8e-12 >seq3 Length=25485961 Score = 105 bits (116), Expect = 9e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 71509 AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTA 71568 || ||||| || || |||| |||||||| ||||| || || || | |||||||||||| Sbjct 17642578 AGGATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 17642637 Query 71569 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 71628 || ||| ||||| || | ||||||||||| ||| ||||||||||| | |||||| Sbjct 17642638 GATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCTA 17642697 Query 71629 ACTATTACTTT 71639 || |||||||| Sbjct 17642698 ACCATTACTTT 17642708 >seq2 Length=28345163 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 |||||| || || ||||||||||||||| ||||| || || | || ||| || ||||| Sbjct 20052938 TACTTCATCAACAGTCCAAAATGATGCTAAGGCCTTCTTGTAAAAATCCCAAATGTCATG 20052997 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 | ||| ||| || || |||||||| | |||||||||| Sbjct 20052998 AAATTTAATAGGAAATATAACAAAACGATTTGGATTT 20053034 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 71509 AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTA 71568 || ||||| | || |||| |||||||| ||||| || || || | |||||||||||| Sbjct 24879745 AGGATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 24879686 Query 71569 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 71628 || ||| | ||| || | ||||||||||| ||| ||||||||||| | |||| | Sbjct 24879685 GATCGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTTA 24879626 Query 71629 ACTATTACTTT 71639 || | ||| || Sbjct 24879625 ACCACTACCTT 24879615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671133545652240