Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq3 105 9e-18
seq2 86.0 8e-12
>seq3
Length=25485961
Score = 105 bits (116), Expect = 9e-18
Identities = 102/131 (78%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 71509 AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTA 71568
|| ||||| || || |||| |||||||| ||||| || || || | ||||||||||||
Sbjct 17642578 AGGATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 17642637
Query 71569 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 71628
|| ||| ||||| || | ||||||||||| ||| ||||||||||| | ||||||
Sbjct 17642638 GATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCTA 17642697
Query 71629 ACTATTACTTT 71639
|| ||||||||
Sbjct 17642698 ACCATTACTTT 17642708
>seq2
Length=28345163
Score = 86.0 bits (94), Expect = 8e-12
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621
|||||| || || ||||||||||||||| ||||| || || | || ||| || |||||
Sbjct 20052938 TACTTCATCAACAGTCCAAAATGATGCTAAGGCCTTCTTGTAAAAATCCCAAATGTCATG 20052997
Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658
| ||| ||| || || |||||||| | ||||||||||
Sbjct 20052998 AAATTTAATAGGAAATATAACAAAACGATTTGGATTT 20053034
Score = 84.2 bits (92), Expect = 3e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 71509 AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTA 71568
|| ||||| | || |||| |||||||| ||||| || || || | ||||||||||||
Sbjct 24879745 AGGATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 24879686
Query 71569 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 71628
|| ||| | ||| || | ||||||||||| ||| ||||||||||| | |||| |
Sbjct 24879685 GATCGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTTA 24879626
Query 71629 ACTATTACTTT 71639
|| | ||| ||
Sbjct 24879625 ACCACTACCTT 24879615
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671133545652240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |