Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2 105 5e-18 seq136 96.9 3e-15 seq100 91.5 1e-13 >seq2 Length=28345163 Score = 105 bits (116), Expect = 5e-18 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCT 15282 |||||| | ||||| || |||||||| |||||||||||||||||| ||||| ||| Sbjct 27365806 CCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 27365865 Query 15283 CTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAG 15342 || ||| | || |||||||| ||| || || || || || |||||||| || || Sbjct 27365866 -TTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAAG 27365924 Query 15343 AGTTTTTACAAAAATTTGCATA 15364 |||||||||||| ||||||||| Sbjct 27365925 AGTTTTTACAAAGATTTGCATA 27365946 Score = 87.8 bits (96), Expect = 1e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 |||||| | ||||| || || || || ||||||||| |||||||| || || | | Sbjct 27366326 CCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATTCCCTCTTTGTCCTGGATCTT-CGC 27366384 Query 15284 TTTACAATT-TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAG 15342 |||| || || |||||||| ||| || || || || || |||||||| || || Sbjct 27366385 TTTAACGTTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAG 27366444 Query 15343 AGTTTTTACAAAAATTTGCATA 15364 |||||||||||||||||||||| Sbjct 27366445 AGTTTTTACAAAAATTTGCATA 27366466 >seq136 Length=9508 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | || | |||||| || || ||||||||||||||||| ||| ||| | Sbjct 6187 CCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCC 6128 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 |||||| |||| || ||||| ||| || ||||| || || ||||| ||||||| Sbjct 6127 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTCAAC 6068 Query 15344 GTTTTTACAAAAATTTGCATA 15364 |||||||||||||||||||| Sbjct 6067 ATTTTTACAAAAATTTGCATA 6047 >seq100 Length=12629 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 15254 GGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||||||||||||| || ||| || |||||||||||| || ||||| | |||| Sbjct 6514 GGAATTCCTTCTTTTTCTTGAATCCTGTCCTTTACAATTTCGATTGTATCAGAAGTTTCA 6573 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || ||||| || ||| |||||||||||||||||||| Sbjct 6574 ACTTCTAAAGTGATTGTTTTGCCCTTCAACGTTTTTACAAAAATTTGCAT 6623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362176224924234