Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq2 105 5e-18
seq136 96.9 3e-15
seq100 91.5 1e-13
>seq2
Length=28345163
Score = 105 bits (116), Expect = 5e-18
Identities = 110/142 (77%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCT 15282
|||||| | ||||| || |||||||| |||||||||||||||||| ||||| |||
Sbjct 27365806 CCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 27365865
Query 15283 CTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAG 15342
|| ||| | || |||||||| ||| || || || || || |||||||| || ||
Sbjct 27365866 -TTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAAG 27365924
Query 15343 AGTTTTTACAAAAATTTGCATA 15364
|||||||||||| |||||||||
Sbjct 27365925 AGTTTTTACAAAGATTTGCATA 27365946
Score = 87.8 bits (96), Expect = 1e-12
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
|||||| | ||||| || || || || ||||||||| |||||||| || || | |
Sbjct 27366326 CCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATTCCCTCTTTGTCCTGGATCTT-CGC 27366384
Query 15284 TTTACAATT-TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAG 15342
|||| || || |||||||| ||| || || || || || |||||||| || ||
Sbjct 27366385 TTTAACGTTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAG 27366444
Query 15343 AGTTTTTACAAAAATTTGCATA 15364
||||||||||||||||||||||
Sbjct 27366445 AGTTTTTACAAAAATTTGCATA 27366466
>seq136
Length=9508
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | || | |||||| || || ||||||||||||||||| ||| ||| |
Sbjct 6187 CCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCC 6128
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| |||| || ||||| ||| || ||||| || || ||||| |||||||
Sbjct 6127 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTCAAC 6068
Query 15344 GTTTTTACAAAAATTTGCATA 15364
||||||||||||||||||||
Sbjct 6067 ATTTTTACAAAAATTTGCATA 6047
>seq100
Length=12629
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 15254 GGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313
|||||||||||||| || ||| || |||||||||||| || ||||| | ||||
Sbjct 6514 GGAATTCCTTCTTTTTCTTGAATCCTGTCCTTTACAATTTCGATTGTATCAGAAGTTTCA 6573
Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| ||||| || || ||||| || ||| ||||||||||||||||||||
Sbjct 6574 ACTTCTAAAGTGATTGTTTTGCCCTTCAACGTTTTTACAAAAATTTGCAT 6623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362176224924234
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |