Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2 102 7e-17 >seq2 Length=28345163 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||| || || ||||||||||| ||||||| || || |||||||| Sbjct 27365419 ACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCC 27365478 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | |||||| || ||| | || |||| ||||||||| || | ||||||||| || | Sbjct 27365479 AACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTTATCCTGA 27365538 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC-TCCGTTTCGACGGTAATGGTTTT 19011 ||||| |||||| | ||| |||||| | |||| || ||| | || || ||||| Sbjct 27365539 ATTTTGGCTTTTACATTCTCGATAGTATC-CGAGGCTTCTACTTCCAACGTTATCGTTTT 27365597 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || || ||||| ||||| Sbjct 27365598 GCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414569394543556