Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2 154 3e-32
seq4 125 2e-23
seq136 100 7e-16
seq100 86.0 1e-11
>seq2
Length=28345163
Score = 154 bits (170), Expect = 3e-32
Identities = 164/214 (77%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | || |||||||| ||||||||||| || || || || | ||||||
Sbjct 27365415 AAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTC 27365474
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| | |||||||| ||||| ||||| | || ||||| || || || || ||||||||
Sbjct 27365475 CTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTTATC 27365534
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAG 104525
|||||| || ||||||||||| || | ||||| | ||| |||||| || | || || |
Sbjct 27365535 CTGAATTTTGGCTTTTACATTCTCGATAGTATC-CGAGGCTTCTACTTCCAACGTTATCG 27365593
Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| || ||||| ||||| ||||| || ||||||||
Sbjct 27365594 TTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627
Score = 104 bits (114), Expect = 5e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||| ||||| | | ||| ||||| || || ||||| ||||| ||||| ||||| |||
Sbjct 27366326 CCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATTCCCTCTTTGTCCTGGATCTTCGCT 27366385
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| || || || | |||||| | ||| || || | ||| || || |||||||||||
Sbjct 27366386 TTAACGTTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 27366445
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||||||||| || |||||
Sbjct 27366446 GTTTTTACAAAAATTTGCAT 27366465
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||| || || | | |||||| || || || ||||||||||| ||||| || || |||
Sbjct 27365806 CCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 27365865
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| ||||| || | |||||| | ||| || || | ||| || || ||||| |||||
Sbjct 27365866 TTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAAGA 27365925
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||||||||| || |||||
Sbjct 27365926 GTTTTTACAAAGATTTGCAT 27365945
Score = 96.9 bits (106), Expect = 8e-15
Identities = 111/148 (75%), Gaps = 1/148 (1%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | ||||||||| || || || ||||| ||||| || |||||||||
Sbjct 27366663 CCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTGCT 27366722
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| |||||||| | || || | || || || || ||||| || || || || | |
Sbjct 27366723 TTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCAAT 27366782
Query 104540 GTTTTTACAAATATCTGCAT-TTTGTGT 104566
|| ||||| || || ||||| |||| ||
Sbjct 27366783 GTCTTTACGAAGATTTGCATGTTTGCGT 27366810
>seq4
Length=16644688
Score = 125 bits (138), Expect = 2e-23
Identities = 114/141 (81%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| |||||||| | | ||| ||||| |||||||| |||||||| ||||||||||| |||
Sbjct 10332666 CCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCGCT 10332725
Query 104480 TTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538
||||||||||| | ||||| | ||| ||| ||||| || ||||| ||||||||||| |
Sbjct 10332726 TTTACATTTTCAATCGTATC-CGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTTAA 10332784
Query 104539 TGTTTTTACAAATATCTGCAT 104559
|| ||||| || || |||||
Sbjct 10332785 AGTCTTTACGAAAATTTGCAT 10332805
Score = 107 bits (118), Expect = 4e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || |||||||| || | || || ||||| || || || || ||||||||||| ||
Sbjct 3142843 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 3142784
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|| || ||||| || | ||||| | ||||||||| || ||||| ||||| |||||
Sbjct 3142783 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 3142724
Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563
| |||||| || ||||| |||||||||
Sbjct 3142723 AATGTTTTCACGAATATTTGCATTTTG 3142697
>seq136
Length=9508
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | || ||||| ||||| ||||||||||| || |||||||| ||
Sbjct 6187 CCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCC 6128
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| | ||| || |||| || || || || || || |
Sbjct 6127 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTCAAC 6068
Query 104540 GTTTTTACAAATATCTGCAT 104559
|||||||||| || |||||
Sbjct 6067 ATTTTTACAAAAATTTGCAT 6048
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| |||||||| | | ||| ||||||||||| || || ||||||| |||||| || |||
Sbjct 6501 CCTGCAAAAATAATACGCTGCTGATCAGGAGGAATGCCCTCTTTATTCTGAATTTTGGCT 6442
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
| |||||| || | | ||| |||||||| ||| || || || |||||||||
Sbjct 6441 TCTACATTCTCGATAGCATCCGGGACTTCTACCTTTAGCGTTGCGGTTTTCCCAGTAAGT 6382
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| || ||||||||
Sbjct 6381 GTTTTATTGAAAATCTGCAT 6362
>seq100
Length=12629
Score = 86.0 bits (94), Expect = 1e-11
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 104415 GTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCT 104474
|||| ||| ||||||| || | ||| ||||| | || ||||||||||| || ||||||
Sbjct 6479 GTTTACCATCAAAAATAAGACACTGCTGATCTAGCGGAATTCCTTCTTTTTCTTGAATCC 6538
Query 104475 TTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAG 104534
| | |||||| |||| | ||||| || ||| || |||| || || || || ||
Sbjct 6539 TGTCCTTTACAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCCT 6598
Query 104535 TAAGTGTTTTTACAAATATCTGCAT 104559
| | ||||||||||| || |||||
Sbjct 6599 TCAACGTTTTTACAAAAATTTGCAT 6623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151388456955192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |