Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 154 3e-32 seq4 125 2e-23 seq136 100 7e-16 seq100 86.0 1e-11 >seq2 Length=28345163 Score = 154 bits (170), Expect = 3e-32 Identities = 164/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || |||||||| ||||||||||| || || || || | |||||| Sbjct 27365415 AAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTC 27365474 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | |||||||| ||||| ||||| | || ||||| || || || || |||||||| Sbjct 27365475 CTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTTATC 27365534 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAG 104525 |||||| || ||||||||||| || | ||||| | ||| |||||| || | || || | Sbjct 27365535 CTGAATTTTGGCTTTTACATTCTCGATAGTATC-CGAGGCTTCTACTTCCAACGTTATCG 27365593 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || ||||| ||||| ||||| || |||||||| Sbjct 27365594 TTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| ||||| | | ||| ||||| || || ||||| ||||| ||||| ||||| ||| Sbjct 27366326 CCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATTCCCTCTTTGTCCTGGATCTTCGCT 27366385 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || || | |||||| | ||| || || | ||| || || ||||||||||| Sbjct 27366386 TTAACGTTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 27366445 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||||||||| || ||||| Sbjct 27366446 GTTTTTACAAAAATTTGCAT 27366465 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| || || | | |||||| || || || ||||||||||| ||||| || || ||| Sbjct 27365806 CCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 27365865 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | |||||| | ||| || || | ||| || || ||||| ||||| Sbjct 27365866 TTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAAGA 27365925 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||||||||| || ||||| Sbjct 27365926 GTTTTTACAAAGATTTGCAT 27365945 Score = 96.9 bits (106), Expect = 8e-15 Identities = 111/148 (75%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | ||||||||| || || || ||||| ||||| || ||||||||| Sbjct 27366663 CCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTGCT 27366722 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | || || | || || || || ||||| || || || || | | Sbjct 27366723 TTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCAAT 27366782 Query 104540 GTTTTTACAAATATCTGCAT-TTTGTGT 104566 || ||||| || || ||||| |||| || Sbjct 27366783 GTCTTTACGAAGATTTGCATGTTTGCGT 27366810 >seq4 Length=16644688 Score = 125 bits (138), Expect = 2e-23 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| | | ||| ||||| |||||||| |||||||| ||||||||||| ||| Sbjct 10332666 CCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCGCT 10332725 Query 104480 TTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 ||||||||||| | ||||| | ||| ||| ||||| || ||||| ||||||||||| | Sbjct 10332726 TTTACATTTTCAATCGTATC-CGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTTAA 10332784 Query 104539 TGTTTTTACAAATATCTGCAT 104559 || ||||| || || ||||| Sbjct 10332785 AGTCTTTACGAAAATTTGCAT 10332805 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || |||||||| || | || || ||||| || || || || ||||||||||| || Sbjct 3142843 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 3142784 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | ||||| | ||||||||| || ||||| ||||| ||||| Sbjct 3142783 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 3142724 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | |||||| || ||||| ||||||||| Sbjct 3142723 AATGTTTTCACGAATATTTGCATTTTG 3142697 >seq136 Length=9508 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | || ||||| ||||| ||||||||||| || |||||||| || Sbjct 6187 CCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCC 6128 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||||| | ||| || |||| || || || || || || | Sbjct 6127 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTCAAC 6068 Query 104540 GTTTTTACAAATATCTGCAT 104559 |||||||||| || ||||| Sbjct 6067 ATTTTTACAAAAATTTGCAT 6048 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| | | ||| ||||||||||| || || ||||||| |||||| || ||| Sbjct 6501 CCTGCAAAAATAATACGCTGCTGATCAGGAGGAATGCCCTCTTTATTCTGAATTTTGGCT 6442 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 | |||||| || | | ||| |||||||| ||| || || || ||||||||| Sbjct 6441 TCTACATTCTCGATAGCATCCGGGACTTCTACCTTTAGCGTTGCGGTTTTCCCAGTAAGT 6382 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || |||||||| Sbjct 6381 GTTTTATTGAAAATCTGCAT 6362 >seq100 Length=12629 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 104415 GTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCT 104474 |||| ||| ||||||| || | ||| ||||| | || ||||||||||| || |||||| Sbjct 6479 GTTTACCATCAAAAATAAGACACTGCTGATCTAGCGGAATTCCTTCTTTTTCTTGAATCC 6538 Query 104475 TTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAG 104534 | | |||||| |||| | ||||| || ||| || |||| || || || || || Sbjct 6539 TGTCCTTTACAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCCT 6598 Query 104535 TAAGTGTTTTTACAAATATCTGCAT 104559 | | ||||||||||| || ||||| Sbjct 6599 TCAACGTTTTTACAAAAATTTGCAT 6623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151388456955192