Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2 145 1e-30 seq4 141 1e-29 seq3 87.8 3e-13 >seq2 Length=28345163 Score = 145 bits (160), Expect = 1e-30 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | || ||||| ||||||||||| || ||||| || || Sbjct 8481339 GCGAAACGTCATCGGAAAGTGTTACGTGATAATATCCAAGGAATTACAAAGCCGGCAATT 8481280 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || | || |||||||||||||| || ||| | || || || | |||||||| | Sbjct 8481279 CGACGATTAGCACGTCGTGGTGGAGTGAAACGTATTTCGGGTCTGATATATGAAGAAACA 8481220 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||||| | ||||| | | || || | |||||| | ||| ||| Sbjct 8481219 CGTGGAGTATTGAAGGTATTCCTTGAAAATGTGATACGTGATGCGGTAACATATTGCGAA 8481160 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || |||||||| || || || | |||||| | || |||||||||||||||||||| Sbjct 8481159 CATGCAAAACGTAAAACAGTTACTGCTATGGATGTAGTTTATGCATTGAAACGTCAAGGT 8481100 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||||| ||||| Sbjct 8481099 CGGACACTTTATGGATTTGG 8481080 >seq4 Length=16644688 Score = 141 bits (156), Expect = 1e-29 Identities = 196/274 (72%), Gaps = 14/274 (5%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | ||| || || || ||||| || || |||||||| ||||| Sbjct 3253970 GCGAAGCGTCATCGCAAAGTTCTGCGTGACAATATCCAGGGTATAACCAAGCCGGCTATT 3254029 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||| || |||||||| || || ||| |||| ||| | | || || |||| Sbjct 3254030 CGACGTTTGGCACGACGTGGTGGCGTGAAACGTATCTCGGGACTAATTTACGAGGAGACG 3254089 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCC---------A 16602 |||| || | || | || || ||| ||| || | ||||||| || | | Sbjct 3254090 CGTGGCGTGCTAAAAGTGTTTCTGGAGAACGTCATACGTGATGCTGTTACGTATTGTGAA 3254149 Query 16603 C----TATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCAT 16658 | ||| || ||||| ||||| ||||||||||| | ||||| |||||||||| | Sbjct 3254150 CTACGTATTGTGAACACGCAAAACGGAAGACTGTCACGGCGATGGACGTCGTCTATGCTT 3254209 Query 16659 TGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||||||| || |||| | ||||||||||| Sbjct 3254210 TGAAACGTCAGGGACGTACATTGTATGGTTTTGG 3254243 >seq3 Length=25485961 Score = 87.8 bits (96), Expect = 3e-13 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||||| | ||| || ||||| || ||||| || || || || ||||| Sbjct 5519614 GCTAAGCGTCATCGCAAAGTTCTACGTGATAATATTCAAGGCATAACGAAACCGGCTATT 5519555 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGA 16548 |||||| |||| || |||||||| || ||||| | || || | | |||||||| Sbjct 5519554 CGTCGTTTGGCACGCCGTGGTGGCGTGAAGCGAATTTCAGGTCTAATTTATGAAGA 5519499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074583757082