Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq2 93.3 1e-13
seq3 84.2 6e-11
>seq2
Length=28345163
Score = 93.3 bits (102), Expect = 1e-13
Identities = 127/175 (73%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 111344 TTGGAAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGA 111403
||||||||| |||| |||||| | | ||||| ||||| ||| |||||||||||| |
Sbjct 21053077 TTGGAAGGGCGTTGTTGAAGAATTGTTATGGTTCATTCGAGGAGATACAAATGCAAAGCA 21053136
Query 111404 ACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTC 111463
| | | ||| ||| ||||||||||||| |||||||| || | ||||| || |
Sbjct 21053137 TTTATCTGATAAAGGTGTCAAAATTTGGGATGCCAATGGATCTCGCCAATTTCTCGA-CC 21053195
Query 111464 AG-TTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCA 111517
|| |||| | ||| | ||||||||||| ||||| |||||||| || ||
Sbjct 21053196 AGCTTGGATTCAGTGACCGAGCTGAAGGTGATCTGGGACCTGTTTACGGCTTCCA 21053250
Score = 84.2 bits (92), Expect = 6e-11
Identities = 89/115 (77%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 27234 TTACGAAGGCGCAATTGTTATTGATGCAAAATCGGGGTTT-TATACGGATCCAGTCGCCA 27292
||| ||||| |||| || || ||| | | ||| ||||| |||| |||| | || |
Sbjct 8301571 TTATGAAGGTGCAACAGTAATCGATCCTAT-TCGAGGTTTCTATAATACTCCAATTGCAA 8301513
Query 27293 CACTTGACTTTGCATCACTATATCCATCAATTATGCTTGCTCACAATTTATGTTA 27347
| ||||| |||||||| ||||||||||| |||||| ||||||| |||||||| ||
Sbjct 8301512 CGCTTGATTTTGCATCTCTATATCCATCCATTATGATTGCTCATAATTTATGCTA 8301458
>seq3
Length=25485961
Score = 84.2 bits (92), Expect = 6e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 364402 AATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTT 364461
|||||||||||| | || ||||| || || ||||||| | | ||||| |||||||| ||
Sbjct 17642669 AATTATTATCCAGTACCGGAAGCGGAACGATCTAATAAGAGACATCGTCCGATTGGCATT 17642610
Query 364462 GGTGTACAGGGCCTCGCTGACGTTTTTAT 364490
||||| || ||||| ||||| | ||||||
Sbjct 17642609 GGTGTTCAAGGCCTAGCTGATGCTTTTAT 17642581
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303342344727068
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |