Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 1e-13 seq3 84.2 6e-11 >seq2 Length=28345163 Score = 93.3 bits (102), Expect = 1e-13 Identities = 127/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 111344 TTGGAAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGA 111403 ||||||||| |||| |||||| | | ||||| ||||| ||| |||||||||||| | Sbjct 21053077 TTGGAAGGGCGTTGTTGAAGAATTGTTATGGTTCATTCGAGGAGATACAAATGCAAAGCA 21053136 Query 111404 ACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTC 111463 | | | ||| ||| ||||||||||||| |||||||| || | ||||| || | Sbjct 21053137 TTTATCTGATAAAGGTGTCAAAATTTGGGATGCCAATGGATCTCGCCAATTTCTCGA-CC 21053195 Query 111464 AG-TTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCA 111517 || |||| | ||| | ||||||||||| ||||| |||||||| || || Sbjct 21053196 AGCTTGGATTCAGTGACCGAGCTGAAGGTGATCTGGGACCTGTTTACGGCTTCCA 21053250 Score = 84.2 bits (92), Expect = 6e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 27234 TTACGAAGGCGCAATTGTTATTGATGCAAAATCGGGGTTT-TATACGGATCCAGTCGCCA 27292 ||| ||||| |||| || || ||| | | ||| ||||| |||| |||| | || | Sbjct 8301571 TTATGAAGGTGCAACAGTAATCGATCCTAT-TCGAGGTTTCTATAATACTCCAATTGCAA 8301513 Query 27293 CACTTGACTTTGCATCACTATATCCATCAATTATGCTTGCTCACAATTTATGTTA 27347 | ||||| |||||||| ||||||||||| |||||| ||||||| |||||||| || Sbjct 8301512 CGCTTGATTTTGCATCTCTATATCCATCCATTATGATTGCTCATAATTTATGCTA 8301458 >seq3 Length=25485961 Score = 84.2 bits (92), Expect = 6e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 364402 AATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTT 364461 |||||||||||| | || ||||| || || ||||||| | | ||||| |||||||| || Sbjct 17642669 AATTATTATCCAGTACCGGAAGCGGAACGATCTAATAAGAGACATCGTCCGATTGGCATT 17642610 Query 364462 GGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 ||||| || ||||| ||||| | |||||| Sbjct 17642609 GGTGTTCAAGGCCTAGCTGATGCTTTTAT 17642581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303342344727068