Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 >seq2 Length=28345163 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||| ||||| | ||| || || | || | ||||| || |||||||| || ||||| Sbjct 27365399 AGCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCG 27365458 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || || || |||||| | ||| || || || |||||| || ||||| ||||| | Sbjct 27365459 ACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTG 27365518 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCG 131184 | || || ||||| || ||| ||| |||| | | ||| | |||||| | || || Sbjct 27365519 GAATGCCCTCTTTATCC-TGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCT 27365577 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 | || | || | ||||| || || || || |||||||||||||||||| Sbjct 27365578 ACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCATG 27365628 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 131095 CCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC 131154 || ||| |||| || ||||| |||||||| || |||||||||||||| ||||||| || Sbjct 27365806 CCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTTTC-GC 27365864 Query 131155 TTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAG 131213 || | | | ||| | ||||| | | || | || | || | ||||||||||| || Sbjct 27365865 TTTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAAG 27365924 Query 131214 AGTTTTTACGAAAATCTGCAT 131234 ||||||||| || || ||||| Sbjct 27365925 AGTTTTTACAAAGATTTGCAT 27365945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472008823292160