Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1 136 3e-27
seq2 127 1e-24
seq4 116 2e-21
seq3 89.7 3e-13
>seq1
Length=2816604
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2461821 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2461880
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| |||||||||||||| |||||||||||||
Sbjct 2461881 TAATCCATTCATGCGCGTCACGAATTAGATGACGA 2461915
>seq2
Length=28345163
Score = 127 bits (140), Expect = 1e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||| ||||| || || ||||||||||| ||||| |||| ||| |||| ||
Sbjct 27365419 ACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCC 27365478
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
|| |||||||||||||| ||||| ||||| ||||| | || | ||| ||||| ||| |
Sbjct 27365479 AACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTTATCCTGA 27365538
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
||||| || ||||||| || |||||| ||| ||||| || || || |||||
Sbjct 27365539 ATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTTG 27365598
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| |||| || || ||||| |||||||||
Sbjct 27365599 CCAGTCAGTGTCTTTACGAAAATCTGCATG 27365628
Score = 116 bits (128), Expect = 2e-21
Identities = 72/77 (94%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 9677569 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGT 9677510
Query 20007 GGTAATATTTAGCCTTA 20023
||| ||||||||||||
Sbjct 9677509 GGTCGTATTTAGCCTTA 9677493
>seq4
Length=16644688
Score = 116 bits (128), Expect = 2e-21
Identities = 72/77 (94%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 13039755 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGT 13039696
Query 20007 GGTAATATTTAGCCTTA 20023
||| ||||||||||||
Sbjct 13039695 GGTCGTATTTAGCCTTA 13039679
Score = 84.2 bits (92), Expect = 1e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||| || || | |||| ||| || || ||| ||||||
Sbjct 3142843 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 3142784
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||||||||||| | |||||| ||| || || | ||||| || || || |||
Sbjct 3142783 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 3142724
Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320
|| |||||||||||||| ||||| ||
Sbjct 3142723 AATGTTTTCACGAATATTTGCATTTT 3142698
>seq3
Length=25485961
Score = 89.7 bits (98), Expect = 3e-13
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 19945 TTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004
|||||| | | ||||||||||| ||||||||||||| ||||||||| ||||||||||||
Sbjct 5384993 TTCTCTTTTTCCAAAGTTCTTTATAACTTTCCCTCACAGTACTTGTTTGCTATCGGTCTC 5385052
Query 20005 GCGGTAATATTTAGCCTTA 20023
| ||| |||||| ||||
Sbjct 5385053 GTGGTCGAATTTAGACTTA 5385071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334944448618094
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |