Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2 116 3e-21 seq4 84.2 2e-11 >seq2 Length=28345163 Score = 116 bits (128), Expect = 3e-21 Identities = 151/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || |||||||| |||| || ||| | || || | ||||| || | || Sbjct 27365627 ATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCG 27365568 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||||||| | || |||| |||| ||| || ||||| || |||||||| || Sbjct 27365567 GATACTATCGAG--AATGTAAAAGCCAAAATTCAG-GATAAAGAGGGCATTCCACCGGAT 27365511 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || |||||||| ||||| || || || | ||| || || ||||| Sbjct 27365510 CAGCAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTAT 27365451 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 ||||||||||||||||| ||||| || Sbjct 27365450 AATATTCAAAAAGAATCGACGCTTCA 27365425 Score = 105 bits (116), Expect = 6e-18 Identities = 102/128 (80%), Gaps = 6/128 (5%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| ||| | ||||||||| | |||||| | |||||||| | ||| Sbjct 27365945 ATGCAAATCTTTGTAAAAACTCTTACCGGTAAAACGATCACATTGGAAGTGGAAGCATCT 27365886 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || |||||| | || |||| |||| || ||||||||||| |||||||| ||| Sbjct 27365885 GATACCATCGAG--AATGTTAAAGCGAAAATCCAG-GACAAAGAAGGAATTCCACCGGAC 27365829 Query 25116 CAACAGCG 25123 |||||||| Sbjct 27365828 CAACAGCG 27365821 >seq4 Length=16644688 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||| || || || ||||| || || | || || | || || || ||||| Sbjct 3142700 AATGCAAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAATCGTC 3142759 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| ||| |||| || |||| ||| || || || || || |||||||||| Sbjct 3142760 TGATACTATTGAGAATGTGAAGGCTAAAATTCA-GGATAAGGAGGGCATCCCACCTGACC 3142818 Query 25117 AACAGCGGATTATTTTTGCCGGCAA 25141 | || || |||||||||| || || Sbjct 3142819 AGCAACGACTTATTTTTGCAGGTAA 3142843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324440481310