Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq2 125 6e-24
seq136 107 2e-18
>seq2
Length=28345163
Score = 125 bits (138), Expect = 6e-24
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || | || || |||||| | || | ||||| ||| || |
Sbjct 27365627 ATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCG 27365568
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| |||||||| || || ||||| |||||||| |||||
Sbjct 27365567 GATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCACCGGATCAG 27365508
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||| || || |||||||| |||||||| ||||| || || | || ||||| ||
Sbjct 27365507 CAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAAT 27365448
Query 22399 ATTCAAAAAGAATCCAC 22415
|||||||||||||| ||
Sbjct 27365447 ATTCAAAAAGAATCGAC 27365431
Score = 98.7 bits (108), Expect = 8e-16
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
||| |||||||| || || || || || ||||| |||||| | |||||||||||||| |
Sbjct 27366806 AAACATGCAAATCTTCGTAAAGACATTGACCGGAAAAACGATTACTCTTGAAGTGGAGGC 27366747
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
| || || | || || | ||| ||| || ||||| ||||| |||||||| || ||
Sbjct 27366746 GTCAGACACGATTGAAAATGTTAAAGCAAAGATACAAGATAAGGAAGGTATTCCGCCGGA 27366687
Query 22335 TCAACAACGTCTTATATTTGCCGG 22358
|||||| || || || ||||| ||
Sbjct 27366686 TCAACAGCGCCTGATTTTTGCTGG 27366663
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| |||||| | |||||||||||| |||| | ||||||||| | |
Sbjct 27365945 ATGCAAATCTTTGTAAAAACTCTTACCGGTAAAACGATCACATTGGAAGTGGAAGCATCT 27365886
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || || | ||| ||||| || ||||| || || |||||||| || |||
Sbjct 27365885 GATACCATCGAGAATGTTAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGGACCAA 27365826
Query 22339 CAACG 22343
|| ||
Sbjct 27365825 CAGCG 27365821
Score = 86.0 bits (94), Expect = 5e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||||||||| |||||| | || |||||||| |||| | ||||||||| | |
Sbjct 27366465 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACAATCACATTGGAAGTGGAAGCATCT 27366406
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || | | ||| || || || ||||| ||||| |||||||| |||||
Sbjct 27366405 GATACCATCGAGAACGTTAAAGCGAAGATCCAGGACAAAGAGGGAATTCCACCGGATCAG 27366346
Query 22339 CAACG 22343
|| ||
Sbjct 27366345 CAGCG 27366341
>seq136
Length=9508
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
||| ||||| || ||||| || || || ||||| |||||| ||| ||||||||||||| |
Sbjct 4706 AAATATGCAGATCTTTGTAAAGACATTGACCGGAAAAACGATCATTCTTGAAGTGGAAGC 4765
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
| || || || || || | ||| |||||| || || |||||||||||||| || ||
Sbjct 4766 GTCAGACACGGTTGAGAATGTTAAAGCAAAAATCCAGGATAAGGAGGGTATTCCGCCGGA 4825
Query 22335 TCAACAACGTCTTATATTTGCCGG 22358
|||||||| || | ||||| ||
Sbjct 4826 ACAACAACGCCTAGTTTTTGCTGG 4849
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||||||||| |||| || || || ||||| ||||| | ||||| ||| || |
Sbjct 6048 ATGCAAATTTTTGTAAAAATGTTGACAGGCAAAACAATCACTTTAGAAGTTGAAGCCTCT 6107
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | || || ||||||||||| || || ||||| || |||||
Sbjct 6108 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 6167
Query 22339 CAACGTCTTATATTTGCCGG 22358
||||||||||| ||||| ||
Sbjct 6168 CAACGTCTTATTTTTGCTGG 6187
Score = 86.0 bits (94), Expect = 5e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 22222 CAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGAT 22281
||||||||||| |||||| | || ||||||||| |||| | ||| ||||| | | |||
Sbjct 5661 CAAATTTTTGTGAAAACTCTTACTGGTAAAACGATCACATTGGAAATGGAAGCATCTGAT 5720
Query 22282 ACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAA 22341
||| | | || | ||| |||||||| ||||| | ||| |||||| | ||||||||
Sbjct 5721 ACCATCAAGAATGTTAAAACGAAAATTCAGGACAAAGGGGGAATTCCATCAGATCAACAG 5780
Query 22342 CG 22343
||
Sbjct 5781 CG 5782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419724552196810
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |