Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 125 6e-24 seq136 107 2e-18 >seq2 Length=28345163 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || |||||| | || | ||||| ||| || | Sbjct 27365627 ATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCG 27365568 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||| || || ||||| |||||||| ||||| Sbjct 27365567 GATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCACCGGATCAG 27365508 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || |||||||| |||||||| ||||| || || | || ||||| || Sbjct 27365507 CAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAAT 27365448 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||||||||| || Sbjct 27365447 ATTCAAAAAGAATCGAC 27365431 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| |||||||| || || || || || ||||| |||||| | |||||||||||||| | Sbjct 27366806 AAACATGCAAATCTTCGTAAAGACATTGACCGGAAAAACGATTACTCTTGAAGTGGAGGC 27366747 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || || | ||| ||| || ||||| ||||| |||||||| || || Sbjct 27366746 GTCAGACACGATTGAAAATGTTAAAGCAAAGATACAAGATAAGGAAGGTATTCCGCCGGA 27366687 Query 22335 TCAACAACGTCTTATATTTGCCGG 22358 |||||| || || || ||||| || Sbjct 27366686 TCAACAGCGCCTGATTTTTGCTGG 27366663 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| | |||||||||||| |||| | ||||||||| | | Sbjct 27365945 ATGCAAATCTTTGTAAAAACTCTTACCGGTAAAACGATCACATTGGAAGTGGAAGCATCT 27365886 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||||| || ||||| || || |||||||| || ||| Sbjct 27365885 GATACCATCGAGAATGTTAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGGACCAA 27365826 Query 22339 CAACG 22343 || || Sbjct 27365825 CAGCG 27365821 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||| | || |||||||| |||| | ||||||||| | | Sbjct 27366465 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACAATCACATTGGAAGTGGAAGCATCT 27366406 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| || || || ||||| ||||| |||||||| ||||| Sbjct 27366405 GATACCATCGAGAACGTTAAAGCGAAGATCCAGGACAAAGAGGGAATTCCACCGGATCAG 27366346 Query 22339 CAACG 22343 || || Sbjct 27366345 CAGCG 27366341 >seq136 Length=9508 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| || || || ||||| |||||| ||| ||||||||||||| | Sbjct 4706 AAATATGCAGATCTTTGTAAAGACATTGACCGGAAAAACGATCATTCTTGAAGTGGAAGC 4765 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || || || || | ||| |||||| || || |||||||||||||| || || Sbjct 4766 GTCAGACACGGTTGAGAATGTTAAAGCAAAAATCCAGGATAAGGAGGGTATTCCGCCGGA 4825 Query 22335 TCAACAACGTCTTATATTTGCCGG 22358 |||||||| || | ||||| || Sbjct 4826 ACAACAACGCCTAGTTTTTGCTGG 4849 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||| || || || ||||| ||||| | ||||| ||| || | Sbjct 6048 ATGCAAATTTTTGTAAAAATGTTGACAGGCAAAACAATCACTTTAGAAGTTGAAGCCTCT 6107 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || ||||||||||| || || ||||| || ||||| Sbjct 6108 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 6167 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||||||||| ||||| || Sbjct 6168 CAACGTCTTATTTTTGCTGG 6187 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 22222 CAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGAT 22281 ||||||||||| |||||| | || ||||||||| |||| | ||| ||||| | | ||| Sbjct 5661 CAAATTTTTGTGAAAACTCTTACTGGTAAAACGATCACATTGGAAATGGAAGCATCTGAT 5720 Query 22282 ACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAA 22341 ||| | | || | ||| |||||||| ||||| | ||| |||||| | |||||||| Sbjct 5721 ACCATCAAGAATGTTAAAACGAAAATTCAGGACAAAGGGGGAATTCCATCAGATCAACAG 5780 Query 22342 CG 22343 || Sbjct 5781 CG 5782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724552196810