Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6 100 6e-16 seq4 98.7 2e-15 >seq6 Length=1564000 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 666140 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 666081 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 666080 CCCCGCATCGGGC 666068 >seq4 Length=16644688 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 11862976 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 11862917 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 11862916 CCCGCATCGGGC 11862905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027827923986834