Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq2 161 2e-34
seq136 89.7 9e-13
seq6 86.0 1e-11
seq4 86.0 1e-11
>seq2
Length=28345163
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| |||||||| || | |||| ||| ||||| || |||||||| || |||||||| ||
Sbjct 27365401 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGAC 27365460
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || ||||| || ||||| || || |||| ||| || || ||||||
Sbjct 27365461 AGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGA 27365520
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| || || || ||||| || || || || |||||| || || | | |||||||
Sbjct 27365521 ATGCCCTCTTTATCCTGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTACT 27365580
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || ||||| || || || ||||| ||||| ||||||||
Sbjct 27365581 TCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627
Score = 84.2 bits (92), Expect = 4e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||||| || | || ||||| ||||||||||||||||| ||
Sbjct 27365629 CCACCACGAAGTCGAAGTACCAAATGCAATGTCGACTCCTTTTGGATGTTATAATCAGAT 27365688
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCC 68323
||||| | |||||||||||| ||||| ||
Sbjct 27365689 AGTGTTCGCCCATCTTCTAATTGCTTACC 27365717
>seq136
Length=9508
Score = 89.7 bits (98), Expect = 9e-13
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||||| || | || ||||| ||||||||||||||||| ||
Sbjct 6360 CCACCACGAAGTCGAAGTACCAAATGCAATGTCGACTCCTTTTGGATGTTATAATCAGAT 6301
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCC 68323
||||| | |||||||||||||||||| ||
Sbjct 6300 AGTGTTCGCCCATCTTCTAACTGCTTACC 6272
>seq6
Length=1564000
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 666139 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 666080
Query 84516 CCCACATCGGGC 84527
||| ||||||||
Sbjct 666079 CCCGCATCGGGC 666068
>seq4
Length=16644688
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||||
Sbjct 11862976 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 11862917
Query 84516 CCCACATCGGGC 84527
||| ||||||||
Sbjct 11862916 CCCGCATCGGGC 11862905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921614635331280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |