Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 161 2e-34 seq136 89.7 9e-13 seq6 86.0 1e-11 seq4 86.0 1e-11 >seq2 Length=28345163 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | |||| ||| ||||| || |||||||| || |||||||| || Sbjct 27365401 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGAC 27365460 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || ||||| || ||||| || || |||| ||| || || |||||| Sbjct 27365461 AGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGA 27365520 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || || || ||||| || || || || |||||| || || | | ||||||| Sbjct 27365521 ATGCCCTCTTTATCCTGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTACT 27365580 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||| || || || ||||| ||||| |||||||| Sbjct 27365581 TCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627 Score = 84.2 bits (92), Expect = 4e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||| || | || ||||| ||||||||||||||||| || Sbjct 27365629 CCACCACGAAGTCGAAGTACCAAATGCAATGTCGACTCCTTTTGGATGTTATAATCAGAT 27365688 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCC 68323 ||||| | |||||||||||| ||||| || Sbjct 27365689 AGTGTTCGCCCATCTTCTAATTGCTTACC 27365717 >seq136 Length=9508 Score = 89.7 bits (98), Expect = 9e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||| || | || ||||| ||||||||||||||||| || Sbjct 6360 CCACCACGAAGTCGAAGTACCAAATGCAATGTCGACTCCTTTTGGATGTTATAATCAGAT 6301 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCC 68323 ||||| | |||||||||||||||||| || Sbjct 6300 AGTGTTCGCCCATCTTCTAACTGCTTACC 6272 >seq6 Length=1564000 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 666139 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 666080 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 666079 CCCGCATCGGGC 666068 >seq4 Length=16644688 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 11862976 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 11862917 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 11862916 CCCGCATCGGGC 11862905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921614635331280