Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq2 114 1e-20
>seq2
Length=28345163
Score = 114 bits (126), Expect = 1e-20
Identities = 166/233 (71%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 114152 AATA-CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210
|||| ||||| || || | | ||| | || | ||| |||||||||||||| || ||||
Sbjct 27365396 AATAGCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAAT 27365455
Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270
| || |||||| || || | ||||| || || |||| || || || || ||||
Sbjct 27365456 CCGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCG 27365515
Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330
| |||||||| ||||| || ||| || ||||| | || | || || | || ||
Sbjct 27365516 GTGGAATGCCCTCTTTATCCTGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTT 27365575
Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
| || |||| || | ||||||||| ||||| || ||||| ||||||||||||
Sbjct 27365576 CTACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCATG 27365628
Score = 98.7 bits (108), Expect = 8e-16
Identities = 111/146 (76%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 114238 GTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCT 114297
|| |||||||| |||| | |||||||||||||| ||||| ||||||||||| || |
Sbjct 27365801 GTATACCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGAT-T 27365859
Query 114298 TTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCG 114356
|| | |||| | | || | ||| || | | ||| || |||| || | |||||| |||
Sbjct 27365860 TTCGCTTTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCG 27365919
Query 114357 GTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||||||||||||| || |||||
Sbjct 27365920 GTAAGAGTTTTTACAAAGATTTGCAT 27365945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420130948858488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |