Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 >seq2 Length=28345163 Score = 114 bits (126), Expect = 1e-20 Identities = 166/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 114152 AATA-CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 |||| ||||| || || | | ||| | || | ||| |||||||||||||| || |||| Sbjct 27365396 AATAGCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAAT 27365455 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | || |||||| || || | ||||| || || |||| || || || || |||| Sbjct 27365456 CCGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCG 27365515 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 | |||||||| ||||| || ||| || ||||| | || | || || | || || Sbjct 27365516 GTGGAATGCCCTCTTTATCCTGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTT 27365575 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 | || |||| || | ||||||||| ||||| || ||||| |||||||||||| Sbjct 27365576 CTACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCATG 27365628 Score = 98.7 bits (108), Expect = 8e-16 Identities = 111/146 (76%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 114238 GTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCT 114297 || |||||||| |||| | |||||||||||||| ||||| ||||||||||| || | Sbjct 27365801 GTATACCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGAT-T 27365859 Query 114298 TTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCG 114356 || | |||| | | || | ||| || | | ||| || |||| || | |||||| ||| Sbjct 27365860 TTCGCTTTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCG 27365919 Query 114357 GTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||||||||||||| || ||||| Sbjct 27365920 GTAAGAGTTTTTACAAAGATTTGCAT 27365945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420130948858488