Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 6e-13 seq5 86.0 7e-12 seq3 82.4 8e-11 >seq2 Length=28345163 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| || |||| |||| | |||||||||| |||||| | ||||||||||| |||| Sbjct 2598942 AAAAGCTTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 2599001 Query 57058 TCACCACTATACTACCGAGGAT 57079 |||||||||||||||||||||| Sbjct 2599002 TCACCACTATACTACCGAGGAT 2599023 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||||||||| ||||| | ||| || || |||| || | ||| || || || || Sbjct 27365437 TCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAG 27365496 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || ||||| ||||| || | ||| | || ||| || ||| ||| |||| | ||| | | Sbjct 27365497 ATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTTATCC-TGAATTTTGGCTTTTACATT 27365555 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || || | ||| || || | ||| || |||||||| || || |||||||| Sbjct 27365556 CTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTAC 27365615 Query 42197 AAAGATTTGCAT 42208 || || ||||| Sbjct 27365616 GAAAATCTGCAT 27365627 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 12045270 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 12045211 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 12045210 TACTACCGAGGA 12045199 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 12046473 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 12046532 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 12046533 TACTACCGAGGA 12046544 >seq5 Length=16048563 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 11508596 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 11508655 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 11508656 TACTACCGAGGA 11508667 >seq3 Length=25485961 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 16648032 CTCCCCGACCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 16647973 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 16647972 TACTACCGAGGAT 16647960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543208223432160