Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq2 89.7 6e-13
seq5 86.0 7e-12
seq3 82.4 8e-11
>seq2
Length=28345163
Score = 89.7 bits (98), Expect = 6e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
|||| || |||| |||| | |||||||||| |||||| | ||||||||||| ||||
Sbjct 2598942 AAAAGCTTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 2599001
Query 57058 TCACCACTATACTACCGAGGAT 57079
||||||||||||||||||||||
Sbjct 2599002 TCACCACTATACTACCGAGGAT 2599023
Score = 87.8 bits (96), Expect = 2e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
|| ||||||||||| ||||| | ||| || || |||| || | ||| || || || ||
Sbjct 27365437 TCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAG 27365496
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136
|| ||||| ||||| || | ||| | || ||| || ||| ||| |||| | ||| | |
Sbjct 27365497 ATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTTATCC-TGAATTTTGGCTTTTACATT 27365555
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | || || | ||| || || | ||| || |||||||| || || ||||||||
Sbjct 27365556 CTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTAC 27365615
Query 42197 AAAGATTTGCAT 42208
|| || |||||
Sbjct 27365616 GAAAATCTGCAT 27365627
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||||| | ||||||||||| |||||||||||||
Sbjct 12045270 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 12045211
Query 57067 TACTACCGAGGA 57078
||||||||||||
Sbjct 12045210 TACTACCGAGGA 12045199
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||||| | ||||||||||| |||||||||||||
Sbjct 12046473 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 12046532
Query 57067 TACTACCGAGGA 57078
||||||||||||
Sbjct 12046533 TACTACCGAGGA 12046544
>seq5
Length=16048563
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||||| | ||||||||||| |||||||||||||
Sbjct 11508596 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 11508655
Query 57067 TACTACCGAGGA 57078
||||||||||||
Sbjct 11508656 TACTACCGAGGA 11508667
>seq3
Length=25485961
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| |||||| | ||||||||||| |||||||||||||
Sbjct 16648032 CTCCCCGACCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 16647973
Query 57067 TACTACCGAGGAT 57079
|||||||||||||
Sbjct 16647972 TACTACCGAGGAT 16647960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543208223432160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |