Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq2 134 1e-26
seq136 113 5e-20
seq100 102 8e-17
>seq2
Length=28345163
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|||||||| | | ||| || || |||| |||||||||||||||||| || ||||| |
Sbjct 27365401 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGAC 27365460
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || |||| || | ||| || |||||| | || || || ||||| || || |||
Sbjct 27365461 AGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGA 27365520
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| || ||||| || || ||||| |||||| ||| | ||||| ||| || |||
Sbjct 27365521 ATGCCCTCTTTATCCTGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTACT 27365580
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | |||| || ||||| |||| || ||||||||||| |||||
Sbjct 27365581 TCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627
Score = 86.0 bits (94), Expect = 6e-12
Identities = 96/126 (76%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCAC 64377
||||| ||||| || |||||||||||||| || || | |||| ||||| ||| ||| |
Sbjct 27365821 CGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGA-TTTTCGCTTTAACATTCTCGAT 27365879
Query 64378 TGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAAT 64437
|||||| || |||||||| | || | || || ||||| | ||||||||| || ||
Sbjct 27365880 GGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAAGAGTTTTTACAAAGAT 27365939
Query 64438 TTGCAT 64443
||||||
Sbjct 27365940 TTGCAT 27365945
>seq136
Length=9508
Score = 113 bits (124), Expect = 5e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || ||||||||||||||||| ||||| || || |
Sbjct 6187 CCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCC 6128
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| || | ||||||| ||| || ||||||| ||| | || ||||| |||||
Sbjct 6127 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTCAAC 6068
Query 64424 GTTTTTACGAAAATTTGCAT 64443
||||||| |||||||||||
Sbjct 6067 ATTTTTACAAAAATTTGCAT 6048
>seq100
Length=12629
Score = 102 bits (112), Expect = 8e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 64308 CATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTA 64367
|| |||| || | |||||| || | |||||||||||||||||||| || | | |||||
Sbjct 6488 CAAAAATAAGACACTGCTGATCTAGCGGAATTCCTTCTTTTTCTTGAATCCTGTCCTTTA 6547
Query 64368 CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTT 64427
||| || | ||||||| | || ||||||| ||| | || ||||| |||| ||||
Sbjct 6548 CAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCCTTCAACGTTT 6607
Query 64428 TTACGAAAATTTGCAT 64443
|||| |||||||||||
Sbjct 6608 TTACAAAAATTTGCAT 6623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499640590492560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |