Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2 134 1e-26 seq136 113 5e-20 seq100 102 8e-17 >seq2 Length=28345163 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | ||| || || |||| |||||||||||||||||| || ||||| | Sbjct 27365401 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGAC 27365460 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || | ||| || |||||| | || || || ||||| || || ||| Sbjct 27365461 AGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGA 27365520 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| || || ||||| |||||| ||| | ||||| ||| || ||| Sbjct 27365521 ATGCCCTCTTTATCCTGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTACT 27365580 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | |||| || ||||| |||| || ||||||||||| ||||| Sbjct 27365581 TCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627 Score = 86.0 bits (94), Expect = 6e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCAC 64377 ||||| ||||| || |||||||||||||| || || | |||| ||||| ||| ||| | Sbjct 27365821 CGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGA-TTTTCGCTTTAACATTCTCGAT 27365879 Query 64378 TGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAAT 64437 |||||| || |||||||| | || | || || ||||| | ||||||||| || || Sbjct 27365880 GGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAAGAGTTTTTACAAAGAT 27365939 Query 64438 TTGCAT 64443 |||||| Sbjct 27365940 TTGCAT 27365945 >seq136 Length=9508 Score = 113 bits (124), Expect = 5e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || ||||||||||||||||| ||||| || || | Sbjct 6187 CCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCC 6128 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| || | ||||||| ||| || ||||||| ||| | || ||||| ||||| Sbjct 6127 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTCAAC 6068 Query 64424 GTTTTTACGAAAATTTGCAT 64443 ||||||| ||||||||||| Sbjct 6067 ATTTTTACAAAAATTTGCAT 6048 >seq100 Length=12629 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 64308 CATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTA 64367 || |||| || | |||||| || | |||||||||||||||||||| || | | ||||| Sbjct 6488 CAAAAATAAGACACTGCTGATCTAGCGGAATTCCTTCTTTTTCTTGAATCCTGTCCTTTA 6547 Query 64368 CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTT 64427 ||| || | ||||||| | || ||||||| ||| | || ||||| |||| |||| Sbjct 6548 CAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCCTTCAACGTTT 6607 Query 64428 TTACGAAAATTTGCAT 64443 |||| ||||||||||| Sbjct 6608 TTACAAAAATTTGCAT 6623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499640590492560