Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 1e-15 >seq2 Length=28345163 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445 ||||||| || | ||| | ||| | || | | || || |||||||| || || || Sbjct 27365399 AGCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCG 27365458 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 || ||||| |||||| | ||||| |||| | ||||||| || || || ||||| | Sbjct 27365459 ACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTG 27365518 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 | || || ||||| || ||| |||| | ||||| | || | || || | | || Sbjct 27365519 GAATGCCCTCTTTATCC-TGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCT 27365577 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || || | ||| | |||||| |||||||| || ||||| |||||||||||| Sbjct 27365578 ACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCATG 27365628 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATT 138541 |||| | |||||||||||||| || || ||||||||||| |||||| ||| | | Sbjct 27365813 AGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCTTTAACAT 27365872 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | ||| || | | ||||| || | || | ||||||||| || |||||||||| Sbjct 27365873 TCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAAGAGTTTTTA 27365932 Query 138602 CAAAAATCTGCAT 138614 |||| || ||||| Sbjct 27365933 CAAAGATTTGCAT 27365945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258218989280