Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq2 98.7 1e-15
>seq2
Length=28345163
Score = 98.7 bits (108), Expect = 1e-15
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445
||||||| || | ||| | ||| | || | | || || |||||||| || || ||
Sbjct 27365399 AGCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCG 27365458
Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505
|| ||||| |||||| | ||||| |||| | ||||||| || || || ||||| |
Sbjct 27365459 ACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTG 27365518
Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564
| || || ||||| || ||| |||| | ||||| | || | || || | | ||
Sbjct 27365519 GAATGCCCTCTTTATCC-TGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCT 27365577
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|| || | ||| | |||||| |||||||| || ||||| ||||||||||||
Sbjct 27365578 ACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCATG 27365628
Score = 82.4 bits (90), Expect = 8e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATT 138541
|||| | |||||||||||||| || || ||||||||||| |||||| ||| | |
Sbjct 27365813 AGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCTTTAACAT 27365872
Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601
|| | ||| || | | ||||| || | || | ||||||||| || ||||||||||
Sbjct 27365873 TCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAAGAGTTTTTA 27365932
Query 138602 CAAAAATCTGCAT 138614
|||| || |||||
Sbjct 27365933 CAAAGATTTGCAT 27365945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496258218989280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |