Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq2 102 6e-17
seq136 84.2 2e-11
seq100 82.4 5e-11
>seq2
Length=28345163
Score = 102 bits (112), Expect = 6e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
|||||| | ||||| ||||||||||| |||||||||||| ||||| ||||| |
Sbjct 27365806 CCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 27365865
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| ||| | || || ||||| ||| || || || || || |||||||| || |||
Sbjct 27365866 TTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAAGA 27365925
Query 15157 GTTTTTACAAAAATTTGCATA 15177
||||||||||| |||||||||
Sbjct 27365926 GTTTTTACAAAGATTTGCATA 27365946
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
|||||| | ||||| ||||| || || ||||||||| || ||||| || || |
Sbjct 27366326 CCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATTCCCTCTTTGTCCTGGATCTTCGCT 27366385
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| || | || || ||||| ||| || || || || || |||||||| || |||
Sbjct 27366386 TTAACGTTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 27366445
Query 15157 GTTTTTACAAAAATTTGCATA 15177
|||||||||||||||||||||
Sbjct 27366446 GTTTTTACAAAAATTTGCATA 27366466
>seq136
Length=9508
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126
||||||||||| ||||| ||| ||| |||||| |||| || ||||| |||
Sbjct 6157 GGAATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTTTCGATTGTATCAGAGGCTTCA 6098
Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| ||||| || || ||||| ||||||| ||||||||||||||||||||
Sbjct 6097 ACTTCTAAAGTGATTGTTTTGCCTGTCAACATTTTTACAAAAATTTGCATA 6047
>seq100
Length=12629
Score = 82.4 bits (90), Expect = 5e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126
||||||||||| || || ||| || ||||||||||| || ||||| | ||||
Sbjct 6514 GGAATTCCTTCTTTTTCTTGAATCCTGTCCTTTACAATTTCGATTGTATCAGAAGTTTCA 6573
Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| ||||| || || ||||| || ||| ||||||||||||||||||||
Sbjct 6574 ACTTCTAAAGTGATTGTTTTGCCCTTCAACGTTTTTACAAAAATTTGCAT 6623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357389064248090
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |