Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq2 118 1e-21
>seq2
Length=28345163
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | || | |||| || | ||| || |||||||||||||| ||||| |
Sbjct 27365401 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGAC 27365460
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||| ||| || || | ||||||||| || |||| | ||| |||||||| || ||
Sbjct 27365461 AGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGA 27365520
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|||||||| || ||| ||| ||| || || | | |||| || |||| || ||
Sbjct 27365521 ATGCCCTCTTTATCC-TGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTAC 27365579
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
||| | || | ||||||||| ||||| || ||||| ||||||||||||
Sbjct 27365580 TTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCATG 27365628
Score = 93.3 bits (102), Expect = 4e-14
Identities = 110/143 (77%), Gaps = 6/143 (4%)
Strand=Plus/Plus
Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033
|||||| | ||||||||||||||||| || || || ||||| |||||| ||| ||| ||
Sbjct 27366326 CCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATTCCCTCTTTGTCCTGGATCTTC-GC 27366384
Query 127034 TTGA--GTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090
|| | ||| |||| ||| || | | || || ||||| | || | ||||| || ||
Sbjct 27366385 TTTAACGTT-CTCGATGGTATCAGATGCT-TCCACTTCCAATGTGATTGTTTTACCAGTA 27366442
Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113
||||||||||||||||| |||||
Sbjct 27366443 AGAGTTTTTACAAAAATTTGCAT 27366465
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033
|||||| ||||||||||||| || || || || || || || |||||| |||||||
Sbjct 27365806 CCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 27365865
Query 127034 TTGAGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092
|| | | |||| ||| || | | || || ||||| | || | |||||| ||||| ||
Sbjct 27365866 TTAACATTCTCGATGGTATCAGATGCT-TCCACTTCCAATGTGATCGTTTTACCGGTAAG 27365924
Query 127093 AGTTTTTACAAAAATCTGCAT 127113
|||||||||||| || |||||
Sbjct 27365925 AGTTTTTACAAAGATTTGCAT 27365945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475496793905760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |