Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 >seq2 Length=28345163 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | |||| || | ||| || |||||||||||||| ||||| | Sbjct 27365401 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGAC 27365460 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| || || | ||||||||| || |||| | ||| |||||||| || || Sbjct 27365461 AGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGA 27365520 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||| || ||| ||| ||| || || | | |||| || |||| || || Sbjct 27365521 ATGCCCTCTTTATCC-TGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTAC 27365579 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| | || | ||||||||| ||||| || ||||| |||||||||||| Sbjct 27365580 TTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCATG 27365628 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/143 (77%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| | ||||||||||||||||| || || || ||||| |||||| ||| ||| || Sbjct 27366326 CCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATTCCCTCTTTGTCCTGGATCTTC-GC 27366384 Query 127034 TTGA--GTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 || | ||| |||| ||| || | | || || ||||| | || | ||||| || || Sbjct 27366385 TTTAACGTT-CTCGATGGTATCAGATGCT-TCCACTTCCAATGTGATTGTTTTACCAGTA 27366442 Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113 ||||||||||||||||| ||||| Sbjct 27366443 AGAGTTTTTACAAAAATTTGCAT 27366465 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| ||||||||||||| || || || || || || || |||||| ||||||| Sbjct 27365806 CCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 27365865 Query 127034 TTGAGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 || | | |||| ||| || | | || || ||||| | || | |||||| ||||| || Sbjct 27365866 TTAACATTCTCGATGGTATCAGATGCT-TCCACTTCCAATGTGATCGTTTTACCGGTAAG 27365924 Query 127093 AGTTTTTACAAAAATCTGCAT 127113 |||||||||||| || ||||| Sbjct 27365925 AGTTTTTACAAAGATTTGCAT 27365945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496793905760