Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq2 114 1e-20
seq4 86.0 6e-12
>seq2
Length=28345163
Score = 114 bits (126), Expect = 1e-20
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| ||||| || | | || || || ||||| ||||| ||||| |||||||||| | |
Sbjct 27365401 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAAT--CCG 27365458
Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231
|| | | || || ||||| |||||||| || | || | ||||||||| ||||| |
Sbjct 27365459 ACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTG 27365518
Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291
||||||| |||||||| |||||||| ||| | || | || || || | || |
Sbjct 27365519 GAATGCCCTCTTTATCCTGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTA 27365578
Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||| | || | ||||||||| || || || ||||| ||||| |||||
Sbjct 27365579 CTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260
|| ||| | |||||||| || |||||||| ||||| |||||||| || || ||||| |
Sbjct 27365806 CCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 27365865
Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320
|| | || | ||| || || | || ||||| | || | |||||| ||||| |||
Sbjct 27365866 TTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAAGA 27365925
Query 45321 GTTTTTACAAAAATTTGCAT 45340
||||||||||| ||||||||
Sbjct 27365926 GTTTTTACAAAGATTTGCAT 27365945
Score = 93.3 bits (102), Expect = 4e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
|||| || || || ||||||||||| ||||| |||||||| || ||| ||| | |
Sbjct 27366672 ATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTGCTTTAACATTT 27366731
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|| | ||||| || | ||| ||||| ||||||| |||||| ||||| | || |||||
Sbjct 27366732 TCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCAATGTCTTTACG 27366791
Query 45330 AAAATTTGCAT 45340
|| ||||||||
Sbjct 27366792 AAGATTTGCAT 27366802
Score = 86.0 bits (94), Expect = 6e-12
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260
|| ||| | |||||||| ||||| ||||| ||||| || ||||| || || || || |
Sbjct 27366326 CCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATTCCCTCTTTGTCCTGGATCTTCGCT 27366385
Query 45261 TTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319
|| | || | || | ||| || || | || ||||| | || | ||||| || || ||
Sbjct 27366386 TTAA-CGTTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAG 27366444
Query 45320 AGTTTTTACAAAAATTTGCAT 45340
|||||||||||||||||||||
Sbjct 27366445 AGTTTTTACAAAAATTTGCAT 27366465
>seq4
Length=16644688
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260
||||| | |||||||| ||||| || || || ||||||||||| || ||||| || |
Sbjct 10332666 CCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCGCT 10332725
Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320
|| | ||| | || || || || ||||| || || |||| || || || |||| |
Sbjct 10332726 TTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTTAAA 10332785
Query 45321 GTTTTTACAAAAATTTGCAT 45340
|| ||||| |||||||||||
Sbjct 10332786 GTCTTTACGAAAATTTGCAT 10332805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451999391873040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |