Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 >seq2 Length=28345163 Score = 100 bits (110), Expect = 2e-16 Identities = 166/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 39489 ATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATC 39548 || |||||| || | ||| || |||| || | || ||||||||| ||||||||||| Sbjct 27365397 ATAGCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATC 27365456 Query 39549 GGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | || || | || ||||| ||||| ||| |||| |||| || |||||||||| Sbjct 27365457 CGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGG 27365516 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCT 39665 || | ||| ||||| || | | |||| | |||| || ||| || || || | | Sbjct 27365517 TGGAATGCCCTCTTTATC-CTGAATTTTGGCTTTTACATTCTCGATA--GTATCCGAGGC 27365573 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||| || ||||| || || ||||| || || | || |||||||| ||||||||| Sbjct 27365574 TTCTACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCATG 27365628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347366746575842