Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq5 172 2e-37
seq2 159 1e-33
seq3 91.5 6e-13
seq136 89.7 2e-12
>seq5
Length=16048563
Score = 172 bits (190), Expect = 2e-37
Identities = 178/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276
|| || || || || ||||| || |||| |||||||||||||| |||||| | ||||
Sbjct 8433411 TACAAGGGCGAGACGAAAACCTTCACTCCAGAAGAAATTTCATCAATGGTTTTGGTTAAA 8433470
Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336
||||| ||||| || ||| || | ||||| | |||| | ||||| || | || ||
Sbjct 8433471 ATGAAGGAAACGGCTGAAGCATTTCTTGGTCATGCAGTCAAGGATGCTGTTGTCACAGTC 8433530
Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396
|| || ||||||||||| |||| || ||||||||||||||| | || || ||||||
Sbjct 8433531 CCAGCATATTTCAATGACTCACAGCGACAAGCAACTAAAGATTCTGGTGCAATCGCTGGT 8433590
Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449
||||||| || |||||||| |||||||| |||||||| ||| | || |||||
Sbjct 8433591 CTAAATGTCCTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGG 8433643
Score = 136 bits (150), Expect = 2e-26
Identities = 195/272 (72%), Gaps = 2/272 (1%)
Strand=Plus/Plus
Query 452220 TTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTA 452279
|||| || | ||||| |||||||| ||||| |||||||||| | || ||||
Sbjct 8429818 TTCAGGTTTACGAAGGTGAACGTGCGATGACGAGAGATAATAACTTGTTGGGTAAATTCG 8429877
Query 452280 CTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATG 452339
||||| ||||| ||| || | || ||| ||||| ||| | || | ||||
Sbjct 8429878 AACTTTCTGGAATTCCGCCTGCTCCTCGTGGTGTTCCACAAATCGAAGTCACTTTTGATA 8429937
Query 452340 TTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAA 452399
| |||||||| |||||||| ||||| ||| || ||||| |||| || || ||
Sbjct 8429938 TCGATGCAAACGGTATTCTAAATGTCTCAGCACAGGATAAATCCACTGGGAAG-CATAAT 8429996
Query 452400 AA-ATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTA 452458
|| ||||||||||||||||||||| ||||| || || || || || |||| ||||||
Sbjct 8429997 AAGATTACAATTACTAATGATAAAGGACGTTTGTCGAAGGATGAAATCGAAAGAATGGTT 8430056
Query 452459 GATGAAGCAGAAAAATTCAAGGATGATGATGA 452490
| ||||| ||||| | ||||| |||||||||
Sbjct 8430057 GCGGAAGCCGAAAAGTACAAGGCTGATGATGA 8430088
Score = 120 bits (132), Expect = 1e-21
Identities = 192/273 (70%), Gaps = 2/273 (1%)
Strand=Plus/Plus
Query 452220 TTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTA 452279
|||| || | |||||| |||||||| ||||| ||| |||||| || || ||||
Sbjct 8434949 TTCAGGTTTATGAAGGTGAACGTGCTATGACGAAAGACAATAATCTGCTTGGTAAATTCG 8435008
Query 452280 CTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATG 452339
| || ||||| ||| || | || || ||||||||| | || | |||
Sbjct 8435009 AATTGTCTGGAATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCACATTCGATA 8435068
Query 452340 TTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAA 452399
|||| || ||||||||| | ||||| ||| || |||||| | |||||| |||||
Sbjct 8435069 TTGACGCGAATGGTATTTTGAATGTTTCCGCACAAGATAAATCAACAGGAAAA-CAGAAC 8435127
Query 452400 AA-ATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTA 452458
|| ||||||||||| ||||| ||| ||||| || || || || ||||| |||||||
Sbjct 8435128 AAGATTACAATTACCAATGACAAAGGACGTTTGTCAAAGGATGAGATTGAGCGAATGGTA 8435187
Query 452459 GATGAAGCAGAAAAATTCAAGGATGATGATGAA 452491
| ||||| || |||| |||| |||||||||
Sbjct 8435188 CAGGAAGCTGAGAAATATAAGGCGGATGATGAA 8435220
Score = 111 bits (122), Expect = 6e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378
||||| ||| | ||||| || || |||||||||||| | ||||| |||||||| ||||||
Sbjct 8428196 GATGCCGTAGTAACTGTACCAGCGTATTTCAATGATTCTCAACGACAAGCAACCAAAGAT 8428255
Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438
|| || ||| |||| | ||||| |||||||| || || || || || || ||||||
Sbjct 8428256 GCGGGTGCCATTTCTGGCCTGAATGTCCTTCGAATCATCAACGAGCCAACTGCTGCTGCT 8428315
Query 451439 CTAGCATATGGACTAG 451454
| |||||||| ||||
Sbjct 8428316 ATTGCATATGGTCTAG 8428331
>seq2
Length=28345163
Score = 159 bits (176), Expect = 1e-33
Identities = 168/221 (76%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291
||||| || |||||||||||||||||| | |||||||| |||||||||||||| ||
Sbjct 17914911 AAAACCTTCGCTCCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAATTGCG 17914970
Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351
||| |||| |||| ||| | ||||||| | || || || ||||| || |||
Sbjct 17914971 GAAGCATATCTTGGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTTTAAT 17915030
Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411
||||||||||| ||||| || ||||||||||| |||||| || | |||||| | ||
Sbjct 17915031 GATGCACAACGTCAAGCCACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTCCGT 17915090
Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452
|| || |||||||| || ||||| ||| | || ||||| ||
Sbjct 17915091 ATCATCAATGAACCAACTGCAGCCGCTATCGCTTATGGGCT 17915131
Score = 107 bits (118), Expect = 8e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || ||||||||||| ||||| || || | || || ||| | ||
Sbjct 27365627 ATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCG 27365568
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || || | | ||| |||||||| ||||| || || ||||| || |||||
Sbjct 27365567 GATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCACCGGATCAG 27365508
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||||| |||| || | || ||||| | || || || | || || |||||||||||
Sbjct 27365507 CAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAAT 27365448
Query 391230 ATTGATAAGGATGCAACACTTCAC 391253
||| | || || | || ||||||
Sbjct 27365447 ATTCAAAAAGAATCGACGCTTCAC 27365424
Score = 98.7 bits (108), Expect = 4e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || ||| |||| || ||||| ||||||||||| || || | ||
Sbjct 27366802 ATGCAAATCTTCGTAAAGACATTGACCGGAAAAACGATTACTCTTGAAGTGGAGGCGTCA 27366743
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | |||||| | ||||| ||| || |||||||||||||| ||||| || ||||||
Sbjct 27366742 GACACGATTGAAAATGTTAAAGCAAAGATACAAGATAAGGAAGGTATTCCGCCGGATCAA 27366683
Query 391170 CAACGTTTAATTTT 391183
|| || | |||||
Sbjct 27366682 CAGCGCCTGATTTT 27366669
Score = 91.5 bits (100), Expect = 6e-13
Identities = 164/238 (69%), Gaps = 10/238 (4%)
Strand=Plus/Plus
Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050
||||| ||||||||||| ||||||||||| ||||| || || | | || | |||
Sbjct 17916182 AATCCAGATGAAGCTGTAGCATATGGTGCAGCAGTCCAGGCTGGTGTTAT------TTCG 17916235
Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110
| ||| |||| || || ||| | ||| ||||||| | ||| | ||||||| ||
Sbjct 17916236 GGTGAAGAAAGCACTGGTGACATTGTATTATTAGATGTGAATCCTTTGACTCTTGGTATT 17916295
Query 452111 GAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGA--ACTTCTATTCCTTGTA 452168
||||||| |||||| | ||||| || | ||| || |||| ||| ||| ||| |
Sbjct 17916296 GAAACAGTTGGTGGTGTAATGACCAAACTTATTCAA--AGGAACACTGTTATCCCTACCA 17916353
Query 452169 AAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGT 452226
| || ||||| | || ||| ||| |||||| || ||| || || ||||| ||
Sbjct 17916354 AGAAAAGTCAGATCTTCTCTACGGCAGCTGATAATCAGCCAACAGTTACCATTCAGGT 17916411
Score = 87.8 bits (96), Expect = 7e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 451481 AATATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540
|||||| | ||||||||| |||| || |||||| |||| || || | | |||||
Sbjct 17915416 AATATTCTTGTATTTGATCTTGGCGGTGGAACTTTTGATGTGTCGATATTGACGATTGAT 17915475
Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600
|||| || || |||||| || ||||| |||||||||||| | || ||||||||| ||
Sbjct 17915476 AATGGTGTTTTCGAAGTACTAGCTACCAACGGTGATACTCATTTGGGTGGTGAAGATTTT 17915535
Query 451601 GAT 451603
|||
Sbjct 17915536 GAT 17915538
>seq3
Length=25485961
Score = 91.5 bits (100), Expect = 6e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 451490 GTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTA 451549
|||| |||||| || ||||| ||| |||| || || ||| |||| || | || ||
Sbjct 20584753 GTATATGATTTGGGCGGAGGTACTTTCGATATATCGGTTCTTGAAATTCAAAAAGGTGTT 20584812
Query 451550 TTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCA 451609
|| ||||| ||| |||||||||||||||| || || ||||||||| |||||||||||
Sbjct 20584813 TTCGAAGTGAAGTCAACCAATGGTGATACATTCCTTGGTGGTGAAGATTTTGATAATGCA 20584872
>seq136
Length=9508
Score = 89.7 bits (98), Expect = 2e-12
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || |||| |||| || ||||| || ||| | || |||||| | |||
Sbjct 6048 ATGCAAATTTTTGTAAAAATGTTGACAGGCAAAACAATCACTTTAGAAGTTGAAGCCTCT 6107
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || ||| | | || || |||||||| || |||||||||||||| |||||
Sbjct 6108 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 6167
Query 391170 CAACGTTTAATTTT 391183
|||||| | |||||
Sbjct 6168 CAACGTCTTATTTT 6181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975701338436792
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