Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5 172 2e-37 seq2 159 1e-33 seq3 91.5 6e-13 seq136 89.7 2e-12 >seq5 Length=16048563 Score = 172 bits (190), Expect = 2e-37 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 || || || || || ||||| || |||| |||||||||||||| |||||| | |||| Sbjct 8433411 TACAAGGGCGAGACGAAAACCTTCACTCCAGAAGAAATTTCATCAATGGTTTTGGTTAAA 8433470 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| ||||| || ||| || | ||||| | |||| | ||||| || | || || Sbjct 8433471 ATGAAGGAAACGGCTGAAGCATTTCTTGGTCATGCAGTCAAGGATGCTGTTGTCACAGTC 8433530 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 || || ||||||||||| |||| || ||||||||||||||| | || || |||||| Sbjct 8433531 CCAGCATATTTCAATGACTCACAGCGACAAGCAACTAAAGATTCTGGTGCAATCGCTGGT 8433590 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||||||| || |||||||| |||||||| |||||||| ||| | || ||||| Sbjct 8433591 CTAAATGTCCTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGG 8433643 Score = 136 bits (150), Expect = 2e-26 Identities = 195/272 (72%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 452220 TTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTA 452279 |||| || | ||||| |||||||| ||||| |||||||||| | || |||| Sbjct 8429818 TTCAGGTTTACGAAGGTGAACGTGCGATGACGAGAGATAATAACTTGTTGGGTAAATTCG 8429877 Query 452280 CTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATG 452339 ||||| ||||| ||| || | || ||| ||||| ||| | || | |||| Sbjct 8429878 AACTTTCTGGAATTCCGCCTGCTCCTCGTGGTGTTCCACAAATCGAAGTCACTTTTGATA 8429937 Query 452340 TTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAA 452399 | |||||||| |||||||| ||||| ||| || ||||| |||| || || || Sbjct 8429938 TCGATGCAAACGGTATTCTAAATGTCTCAGCACAGGATAAATCCACTGGGAAG-CATAAT 8429996 Query 452400 AA-ATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTA 452458 || ||||||||||||||||||||| ||||| || || || || || |||| |||||| Sbjct 8429997 AAGATTACAATTACTAATGATAAAGGACGTTTGTCGAAGGATGAAATCGAAAGAATGGTT 8430056 Query 452459 GATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 | ||||| ||||| | ||||| ||||||||| Sbjct 8430057 GCGGAAGCCGAAAAGTACAAGGCTGATGATGA 8430088 Score = 120 bits (132), Expect = 1e-21 Identities = 192/273 (70%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 452220 TTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTA 452279 |||| || | |||||| |||||||| ||||| ||| |||||| || || |||| Sbjct 8434949 TTCAGGTTTATGAAGGTGAACGTGCTATGACGAAAGACAATAATCTGCTTGGTAAATTCG 8435008 Query 452280 CTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATG 452339 | || ||||| ||| || | || || ||||||||| | || | ||| Sbjct 8435009 AATTGTCTGGAATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCACATTCGATA 8435068 Query 452340 TTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAA 452399 |||| || ||||||||| | ||||| ||| || |||||| | |||||| ||||| Sbjct 8435069 TTGACGCGAATGGTATTTTGAATGTTTCCGCACAAGATAAATCAACAGGAAAA-CAGAAC 8435127 Query 452400 AA-ATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTA 452458 || ||||||||||| ||||| ||| ||||| || || || || ||||| ||||||| Sbjct 8435128 AAGATTACAATTACCAATGACAAAGGACGTTTGTCAAAGGATGAGATTGAGCGAATGGTA 8435187 Query 452459 GATGAAGCAGAAAAATTCAAGGATGATGATGAA 452491 | ||||| || |||| |||| ||||||||| Sbjct 8435188 CAGGAAGCTGAGAAATATAAGGCGGATGATGAA 8435220 Score = 111 bits (122), Expect = 6e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| ||| | ||||| || || |||||||||||| | ||||| |||||||| |||||| Sbjct 8428196 GATGCCGTAGTAACTGTACCAGCGTATTTCAATGATTCTCAACGACAAGCAACCAAAGAT 8428255 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || || ||| |||| | ||||| |||||||| || || || || || || |||||| Sbjct 8428256 GCGGGTGCCATTTCTGGCCTGAATGTCCTTCGAATCATCAACGAGCCAACTGCTGCTGCT 8428315 Query 451439 CTAGCATATGGACTAG 451454 | |||||||| |||| Sbjct 8428316 ATTGCATATGGTCTAG 8428331 >seq2 Length=28345163 Score = 159 bits (176), Expect = 1e-33 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 ||||| || |||||||||||||||||| | |||||||| |||||||||||||| || Sbjct 17914911 AAAACCTTCGCTCCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAATTGCG 17914970 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 ||| |||| |||| ||| | ||||||| | || || || ||||| || ||| Sbjct 17914971 GAAGCATATCTTGGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTTTAAT 17915030 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411 ||||||||||| ||||| || ||||||||||| |||||| || | |||||| | || Sbjct 17915031 GATGCACAACGTCAAGCCACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTCCGT 17915090 Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 || || |||||||| || ||||| ||| | || ||||| || Sbjct 17915091 ATCATCAATGAACCAACTGCAGCCGCTATCGCTTATGGGCT 17915131 Score = 107 bits (118), Expect = 8e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || ||||||||||| ||||| || || | || || ||| | || Sbjct 27365627 ATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCG 27365568 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | ||| |||||||| ||||| || || ||||| || ||||| Sbjct 27365567 GATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCACCGGATCAG 27365508 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| |||| || | || ||||| | || || || | || || ||||||||||| Sbjct 27365507 CAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAAT 27365448 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 ||| | || || | || |||||| Sbjct 27365447 ATTCAAAAAGAATCGACGCTTCAC 27365424 Score = 98.7 bits (108), Expect = 4e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || ||| |||| || ||||| ||||||||||| || || | || Sbjct 27366802 ATGCAAATCTTCGTAAAGACATTGACCGGAAAAACGATTACTCTTGAAGTGGAGGCGTCA 27366743 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||||| ||| || |||||||||||||| ||||| || |||||| Sbjct 27366742 GACACGATTGAAAATGTTAAAGCAAAGATACAAGATAAGGAAGGTATTCCGCCGGATCAA 27366683 Query 391170 CAACGTTTAATTTT 391183 || || | ||||| Sbjct 27366682 CAGCGCCTGATTTT 27366669 Score = 91.5 bits (100), Expect = 6e-13 Identities = 164/238 (69%), Gaps = 10/238 (4%) Strand=Plus/Plus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 ||||| ||||||||||| ||||||||||| ||||| || || | | || | ||| Sbjct 17916182 AATCCAGATGAAGCTGTAGCATATGGTGCAGCAGTCCAGGCTGGTGTTAT------TTCG 17916235 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | ||| |||| || || ||| | ||| ||||||| | ||| | ||||||| || Sbjct 17916236 GGTGAAGAAAGCACTGGTGACATTGTATTATTAGATGTGAATCCTTTGACTCTTGGTATT 17916295 Query 452111 GAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGA--ACTTCTATTCCTTGTA 452168 ||||||| |||||| | ||||| || | ||| || |||| ||| ||| ||| | Sbjct 17916296 GAAACAGTTGGTGGTGTAATGACCAAACTTATTCAA--AGGAACACTGTTATCCCTACCA 17916353 Query 452169 AAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGT 452226 | || ||||| | || ||| ||| |||||| || ||| || || ||||| || Sbjct 17916354 AGAAAAGTCAGATCTTCTCTACGGCAGCTGATAATCAGCCAACAGTTACCATTCAGGT 17916411 Score = 87.8 bits (96), Expect = 7e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 451481 AATATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 |||||| | ||||||||| |||| || |||||| |||| || || | | ||||| Sbjct 17915416 AATATTCTTGTATTTGATCTTGGCGGTGGAACTTTTGATGTGTCGATATTGACGATTGAT 17915475 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600 |||| || || |||||| || ||||| |||||||||||| | || ||||||||| || Sbjct 17915476 AATGGTGTTTTCGAAGTACTAGCTACCAACGGTGATACTCATTTGGGTGGTGAAGATTTT 17915535 Query 451601 GAT 451603 ||| Sbjct 17915536 GAT 17915538 >seq3 Length=25485961 Score = 91.5 bits (100), Expect = 6e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 451490 GTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTA 451549 |||| |||||| || ||||| ||| |||| || || ||| |||| || | || || Sbjct 20584753 GTATATGATTTGGGCGGAGGTACTTTCGATATATCGGTTCTTGAAATTCAAAAAGGTGTT 20584812 Query 451550 TTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCA 451609 || ||||| ||| |||||||||||||||| || || ||||||||| ||||||||||| Sbjct 20584813 TTCGAAGTGAAGTCAACCAATGGTGATACATTCCTTGGTGGTGAAGATTTTGATAATGCA 20584872 >seq136 Length=9508 Score = 89.7 bits (98), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || |||| |||| || ||||| || ||| | || |||||| | ||| Sbjct 6048 ATGCAAATTTTTGTAAAAATGTTGACAGGCAAAACAATCACTTTAGAAGTTGAAGCCTCT 6107 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || |||||||| || |||||||||||||| ||||| Sbjct 6108 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 6167 Query 391170 CAACGTTTAATTTT 391183 |||||| | ||||| Sbjct 6168 CAACGTCTTATTTT 6181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975701338436792