Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq5 187 2e-41
seq2 152 4e-31
>seq5
Length=16048563
Score = 187 bits (206), Expect = 2e-41
Identities = 265/370 (72%), Gaps = 7/370 (2%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
|| || || | |||||| |||| ||| || || ||||||||||| ||||||| || |||
Sbjct 8433655 TTCTTGTCCAAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAGGACA 8433596
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| |||||||| ||| || | ||||||||| ||||||| ||||| || || ||||||
Sbjct 8433595 TTTAGACCAGCGATTGCACCAGAATCTTTAGTTGCTTGTCGCTGTGAGTCATTGAAATAT 8433536
Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344
|| || || || | ||| ||||| | ||| | | ||||| | | || |||||||
Sbjct 8433535 GCTGGGACTGTGACAACAGCATCCTTGACTGCATGACCAAGAAATGCTTCAGCCGTTTCC 8433476
Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GGGAATATTGCTTGGATTCAT 518402
||||||||| |||| |||||||||||||| ||||| | ||| || || | ||
Sbjct 8433475 TTCATTTTAACCAAAACCATTGATGAAATTTCTTCTGGAGTGAAGGTT--TTCGTCTCGC 8433418
Query 518403 TTTGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCC 518459
| ||| || | | | |||||| | |||| |||| | ||||| |||||||
Sbjct 8433417 CCTTGTATTCAACCTGCACTTTTGGTTTACCACCACCAGCATTCACGACTTTGAATGGCC 8433358
Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519
||| |||||||||||| || || | |||| ||| | | |||||| |||||||| |
Sbjct 8433357 AGTGTTTCATATCTGACTGTACTGATCCATCATCAAATTTACGACCAATCAATCGTTTCG 8433298
Query 518520 CATCAAAAAT 518529
|||| ||||
Sbjct 8433297 CATCTGAAAT 8433288
Score = 118 bits (130), Expect = 8e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
|||||||| |||||||| |||| ||||||||||||||| || || || |||| | |||
Sbjct 8428338 TTTTTATCTAGACCATATGCAATAGCAGCAGCAGTTGGCTCGTTGATGATTCGAAGGACA 8428279
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| || |||| ||| || |||||||| || ||||||| ||| ||||| || |||||
Sbjct 8428278 TTCAGGCCAGAAATGGCACCCGCATCTTTGGTTGCTTGTCGTTGAGAATCATTGAAATAC 8428219
Query 518285 GCAGGAACAGTAATAACGGCATC 518307
|| || ||||| | ||||||||
Sbjct 8428218 GCTGGTACAGTTACTACGGCATC 8428196
Score = 116 bits (128), Expect = 3e-20
Identities = 179/253 (71%), Gaps = 2/253 (1%)
Strand=Plus/Minus
Query 517626 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 517685
||||||| ||||||| | ||| ||| |||| ||| ||| ||| |||| ||| |||||||
Sbjct 8434480 CTTCATCTGGATTAATACTTTTATTCAGTTCTTTGCCAGAGAAGAAATCTGAGAGAAGTT 8434421
Query 517686 GTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744
||| ||| || |||||||| | |||||| || |||| |||||| ||||| || || | |
Sbjct 8434420 -TCTGTACTTTCGGAATACGCGTTGATCCACCTACTAGTACAATGTCATGAACTTGAGCT 8434362
Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAG 517804
||||||| || | || || |||| ||||| || || | | | |||||
Sbjct 8434361 TTATCCATCTTGGCGTCACGCAATGCTTTCTCAACCGGATCCATGGTTGAGCGGAACAAA 8434302
Query 517805 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 517864
|| | ||| |||||||| || || | |||| | | | |||| || || |||
Sbjct 8434301 TCAGCACATAGTTCTTCAAAACGGGCACGCGTAATGTTTGTGTAAAAATCGATCCCCTCG 8434242
Query 517865 AACAAAGAATCAA 517877
|||||||||||||
Sbjct 8434241 AACAAAGAATCAA 8434229
Score = 105 bits (116), Expect = 5e-17
Identities = 102/131 (78%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 322241 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 322300
||||| || |||| ||| ||||| ||||||||||| || ||| || |||| || |||
Sbjct 8433646 AAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAGGACATTTAGACCA 8433587
Query 322301 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 322360
|| ||| | ||||||| ||||||||||| ||||| |||||| ||||||||||| ||
Sbjct 8433586 GCGATTGCACCAGAATCTTTAGTTGCTTGTCGCTGTGAGTCATTGAAATATGCTGGGACT 8433527
Query 322361 GTAATAACTGC 322371
|| | ||| ||
Sbjct 8433526 GTGACAACAGC 8433516
Score = 98.7 bits (108), Expect = 8e-15
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582
|||||| |||||| |||||| |||||| | |||| |||||| ||||| ||||| ||
Sbjct 8433029 CAAAAACAGTATTATGTGGATTCATTGCAACCTGATTTTTGGCCGCATCACCAATAAGGC 8432970
Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629
|||| || || ||||||| ||||||||||| ||||| || ||||||
Sbjct 8432969 GTTCAGTGTCGGTAAATGCCACATATGATGGTGTTGTTCGGTTACCT 8432923
Score = 95.1 bits (104), Expect = 9e-14
Identities = 156/225 (69%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 517174 CATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTT 517233
||||| |||||| | ||| | || || | ||| | ||| ||||| ||||| || ||
Sbjct 8435184 CATTCGCTCAATCTCATCCTTTGACAAACGTCCTTTGTCATTGGTAATTGTAATCTTGTT 8435125
Query 517234 GGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATC 517293
||| |||||||||||| || | ||||| | ||||||||| || || | |||
Sbjct 8435124 CTGTTTTCCTGTTGATTTATCTTGTGCGGAAACATTCAAAATACCATTCGCGTCAATATC 8435065
Query 517294 AAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAA 517353
||||||||||||||||| || || || | ||||||| || || || ||| | ||
Sbjct 8435064 GAATGTGACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAATTCGAA 8435005
Query 517354 TGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTC 517398
| | || || |||||| ||||| || | |||||||| ||
Sbjct 8435004 TTTACCAAGCAGATTATTGTCTTTCGTCATAGCACGTTCACCTTC 8434960
>seq2
Length=28345163
Score = 152 bits (168), Expect = 4e-31
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215
||| ||| || ||||| || ||||| || | ||| || |||||||||||||| || ||
Sbjct 17915149 TTGCCTTCCTTCTTATCCAGCCCATAAGCGATAGCGGCTGCAGTTGGTTCATTGATGATA 17915090
Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275
| | |||||| || || ||||| | ||||||||||| |||||||| | ||||| |||
Sbjct 17915089 CGGACAACATTGAGGCCGGCAATAGTACCTGCATCTTTGGTGGCTTGACGTTGTGCATCA 17915030
Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT 518335
||||| || ||||| || || | ||| |||| | |||||||| |||| ||| ||
Sbjct 17915029 TTAAAGTAAGCAGGTACTGTGACAACTGCATGTTTCACTTCTTTTCCAAGATATGCTTCC 17914970
Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382
|| ||| ||||||||||| | || ||| | |||||||| ||| ||
Sbjct 17914969 GCAATTTCTTTCATTTTACCGAGAACCATCGCTGAAATTTCTTCAGG 17914923
Score = 89.7 bits (98), Expect = 4e-12
Identities = 130/185 (70%), Gaps = 8/185 (4%)
Strand=Plus/Minus
Query 668823 AAGTCACTAAATCAATGTCTGAAAGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATT 668882
|||||| | || ||| ||||||||| | |||||||| || || ||||| ||||
Sbjct 20172852 AAGTCAATTAAACAACGTCTGAAAG--------GGAAAGAAGGCCGAATCAGAGGGAATT 20172801
Query 668883 TGATGGGAAAACGTGTCGATATGTCTGCACGTACAGTTATTACTTCTGATCCCAATATTG 668942
||||||| ||||| || ||| | || || || || || || || | ||||| ||| |
Sbjct 20172800 TGATGGGCAAACGAGTGGATTTCTCAGCCCGAACTGTGATCACACCAGATCCAAATCTAC 20172741
Query 668943 CTCTCAATGAAGTTGGTGTTCCTCTTATTATTGCTAAAAATCTTACTTTTGACGAAATTG 669002
|| | || |||||| || |||| || |||||| |||| | || || |||||||
Sbjct 20172740 CTATAGATACAGTTGGCGTACCTCGTACTATTGCCCAAAACATGACATTCCCAGAAATTG 20172681
Query 669003 TAACA 669007
| |||
Sbjct 20172680 TTACA 20172676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780788953899844
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |