Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq5 187 2e-41 seq2 152 4e-31 >seq5 Length=16048563 Score = 187 bits (206), Expect = 2e-41 Identities = 265/370 (72%), Gaps = 7/370 (2%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || | |||||| |||| ||| || || ||||||||||| ||||||| || ||| Sbjct 8433655 TTCTTGTCCAAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAGGACA 8433596 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || |||||||| ||| || | ||||||||| ||||||| ||||| || || |||||| Sbjct 8433595 TTTAGACCAGCGATTGCACCAGAATCTTTAGTTGCTTGTCGCTGTGAGTCATTGAAATAT 8433536 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || || || | ||| ||||| | ||| | | ||||| | | || ||||||| Sbjct 8433535 GCTGGGACTGTGACAACAGCATCCTTGACTGCATGACCAAGAAATGCTTCAGCCGTTTCC 8433476 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GGGAATATTGCTTGGATTCAT 518402 ||||||||| |||| |||||||||||||| ||||| | ||| || || | || Sbjct 8433475 TTCATTTTAACCAAAACCATTGATGAAATTTCTTCTGGAGTGAAGGTT--TTCGTCTCGC 8433418 Query 518403 TTTGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCC 518459 | ||| || | | | |||||| | |||| |||| | ||||| ||||||| Sbjct 8433417 CCTTGTATTCAACCTGCACTTTTGGTTTACCACCACCAGCATTCACGACTTTGAATGGCC 8433358 Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519 ||| |||||||||||| || || | |||| ||| | | |||||| |||||||| | Sbjct 8433357 AGTGTTTCATATCTGACTGTACTGATCCATCATCAAATTTACGACCAATCAATCGTTTCG 8433298 Query 518520 CATCAAAAAT 518529 |||| |||| Sbjct 8433297 CATCTGAAAT 8433288 Score = 118 bits (130), Expect = 8e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| |||||||| |||| ||||||||||||||| || || || |||| | ||| Sbjct 8428338 TTTTTATCTAGACCATATGCAATAGCAGCAGCAGTTGGCTCGTTGATGATTCGAAGGACA 8428279 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| ||| || |||||||| || ||||||| ||| ||||| || ||||| Sbjct 8428278 TTCAGGCCAGAAATGGCACCCGCATCTTTGGTTGCTTGTCGTTGAGAATCATTGAAATAC 8428219 Query 518285 GCAGGAACAGTAATAACGGCATC 518307 || || ||||| | |||||||| Sbjct 8428218 GCTGGTACAGTTACTACGGCATC 8428196 Score = 116 bits (128), Expect = 3e-20 Identities = 179/253 (71%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 517626 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 517685 ||||||| ||||||| | ||| ||| |||| ||| ||| ||| |||| ||| ||||||| Sbjct 8434480 CTTCATCTGGATTAATACTTTTATTCAGTTCTTTGCCAGAGAAGAAATCTGAGAGAAGTT 8434421 Query 517686 GTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744 ||| ||| || |||||||| | |||||| || |||| |||||| ||||| || || | | Sbjct 8434420 -TCTGTACTTTCGGAATACGCGTTGATCCACCTACTAGTACAATGTCATGAACTTGAGCT 8434362 Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAG 517804 ||||||| || | || || |||| ||||| || || | | | ||||| Sbjct 8434361 TTATCCATCTTGGCGTCACGCAATGCTTTCTCAACCGGATCCATGGTTGAGCGGAACAAA 8434302 Query 517805 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 517864 || | ||| |||||||| || || | |||| | | | |||| || || ||| Sbjct 8434301 TCAGCACATAGTTCTTCAAAACGGGCACGCGTAATGTTTGTGTAAAAATCGATCCCCTCG 8434242 Query 517865 AACAAAGAATCAA 517877 ||||||||||||| Sbjct 8434241 AACAAAGAATCAA 8434229 Score = 105 bits (116), Expect = 5e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 322241 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 322300 ||||| || |||| ||| ||||| ||||||||||| || ||| || |||| || ||| Sbjct 8433646 AAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAGGACATTTAGACCA 8433587 Query 322301 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 322360 || ||| | ||||||| ||||||||||| ||||| |||||| ||||||||||| || Sbjct 8433586 GCGATTGCACCAGAATCTTTAGTTGCTTGTCGCTGTGAGTCATTGAAATATGCTGGGACT 8433527 Query 322361 GTAATAACTGC 322371 || | ||| || Sbjct 8433526 GTGACAACAGC 8433516 Score = 98.7 bits (108), Expect = 8e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||| |||||| |||||| | |||| |||||| ||||| ||||| || Sbjct 8433029 CAAAAACAGTATTATGTGGATTCATTGCAACCTGATTTTTGGCCGCATCACCAATAAGGC 8432970 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 |||| || || ||||||| ||||||||||| ||||| || |||||| Sbjct 8432969 GTTCAGTGTCGGTAAATGCCACATATGATGGTGTTGTTCGGTTACCT 8432923 Score = 95.1 bits (104), Expect = 9e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 517174 CATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTT 517233 ||||| |||||| | ||| | || || | ||| | ||| ||||| ||||| || || Sbjct 8435184 CATTCGCTCAATCTCATCCTTTGACAAACGTCCTTTGTCATTGGTAATTGTAATCTTGTT 8435125 Query 517234 GGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATC 517293 ||| |||||||||||| || | ||||| | ||||||||| || || | ||| Sbjct 8435124 CTGTTTTCCTGTTGATTTATCTTGTGCGGAAACATTCAAAATACCATTCGCGTCAATATC 8435065 Query 517294 AAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAA 517353 ||||||||||||||||| || || || | ||||||| || || || ||| | || Sbjct 8435064 GAATGTGACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAATTCGAA 8435005 Query 517354 TGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTC 517398 | | || || |||||| ||||| || | |||||||| || Sbjct 8435004 TTTACCAAGCAGATTATTGTCTTTCGTCATAGCACGTTCACCTTC 8434960 >seq2 Length=28345163 Score = 152 bits (168), Expect = 4e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 ||| ||| || ||||| || ||||| || | ||| || |||||||||||||| || || Sbjct 17915149 TTGCCTTCCTTCTTATCCAGCCCATAAGCGATAGCGGCTGCAGTTGGTTCATTGATGATA 17915090 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 | | |||||| || || ||||| | ||||||||||| |||||||| | ||||| ||| Sbjct 17915089 CGGACAACATTGAGGCCGGCAATAGTACCTGCATCTTTGGTGGCTTGACGTTGTGCATCA 17915030 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT 518335 ||||| || ||||| || || | ||| |||| | |||||||| |||| ||| || Sbjct 17915029 TTAAAGTAAGCAGGTACTGTGACAACTGCATGTTTCACTTCTTTTCCAAGATATGCTTCC 17914970 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 || ||| ||||||||||| | || ||| | |||||||| ||| || Sbjct 17914969 GCAATTTCTTTCATTTTACCGAGAACCATCGCTGAAATTTCTTCAGG 17914923 Score = 89.7 bits (98), Expect = 4e-12 Identities = 130/185 (70%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 668823 AAGTCACTAAATCAATGTCTGAAAGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATT 668882 |||||| | || ||| ||||||||| | |||||||| || || ||||| |||| Sbjct 20172852 AAGTCAATTAAACAACGTCTGAAAG--------GGAAAGAAGGCCGAATCAGAGGGAATT 20172801 Query 668883 TGATGGGAAAACGTGTCGATATGTCTGCACGTACAGTTATTACTTCTGATCCCAATATTG 668942 ||||||| ||||| || ||| | || || || || || || || | ||||| ||| | Sbjct 20172800 TGATGGGCAAACGAGTGGATTTCTCAGCCCGAACTGTGATCACACCAGATCCAAATCTAC 20172741 Query 668943 CTCTCAATGAAGTTGGTGTTCCTCTTATTATTGCTAAAAATCTTACTTTTGACGAAATTG 669002 || | || |||||| || |||| || |||||| |||| | || || ||||||| Sbjct 20172740 CTATAGATACAGTTGGCGTACCTCGTACTATTGCCCAAAACATGACATTCCCAGAAATTG 20172681 Query 669003 TAACA 669007 | ||| Sbjct 20172680 TTACA 20172676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780788953899844