Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 161 1e-34 seq5 136 5e-27 >seq2 Length=28345163 Score = 161 bits (178), Expect = 1e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 |||||||| || || || |||||||| || || ||||||||||| || ||||| | | Sbjct 17915140 TTCTTATCCAGCCCATAAGCGATAGCGGCTGCAGTTGGTTCATTGATGATACGGACAACA 17915081 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||| |||||||| | |||||||| || ||||| ||||| | ||| |||||||| Sbjct 17915080 TTGAGGCCGGCAATAGTACCTGCATCTTTGGTGGCTTGACGTTGTGCATCATTAAAGTAA 17915021 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || || || || | | |||| || || ||||| | |||||| || ||| Sbjct 17915020 GCAGGTACTGTGACAACTGCATGTTTCACTTCTTTTCCAAGATATGCTTCCGCAATTTCT 17914961 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 |||||||| |||||||||| |||||| ||||||| Sbjct 17914960 TTCATTTTACCGAGAACCATCGCTGAAATTTCTTCAG 17914924 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 184231 TTTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAAT 184290 |||||| | ||| ||||| ||||| || | ||||| |||||||| ||||| | || Sbjct 14161044 TTTACCACGAAGAGGAAATACACCATATTTGTCACGTCCAACAACCCCCAGACCTGAAAC 14161103 Query 184291 TGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGT 184350 || | | ||| || ||||||||||| |||| |||||| ||||||| |||| | | Sbjct 14161104 AGCCAACGATTTGGCTGAATCACCTTCCGTAAGAATAAGCGTACACTGTGCAGAATTCTT 14161163 Query 184351 GGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAATACCC 184390 ||||| || | || ||||| || | |||||| | |||| Sbjct 14161164 CGTACCAGCATCGTTAGCATCTTCCAATTTTGGCACACCC 14161203 >seq5 Length=16048563 Score = 136 bits (150), Expect = 5e-27 Identities = 186/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 7056 CCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTT 7115 ||||||| || ||||| |||| ||||||||||| || ||| |||| || | || || Sbjct 8429386 CCTCATCTGGATTAATGCTTTTGTTCAGTTCTTTTCCAGAAAAGAAATCGGAGAGCAATT 8429327 Query 7116 GTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATT 7175 ||| | ||| || || || || || || || |||||||| || |||| || || | || Sbjct 8429326 TTTGTACTTTTGGAATACGAGTAGAACCGCCAACCAAAACAATATCATGCATTTGAGCTT 8429267 Query 7176 TATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGT 7235 |||| ||||| | || || | || ||| || || || ||||| | ||||||||| | Sbjct 8429266 TATCCATCTTAGCATCACGCAATGCTTTCTCAACGGGATCCATGGTTGAACGGAACAAAT 8429207 Query 7236 CCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGT 7295 | ||| || || |||||||| || ||||| || || || || ||| |||||| Sbjct 8429206 CAGCACAAAGCTCTTCAAAACGGGCTCGGGTGATACTAGTGTAAAAGTCAGTACCGTCGA 8429147 Query 7296 ATAACGAATCAATTTCAATG 7315 | | ||||||||||||||| Sbjct 8429146 AGAGTGAATCAATTTCAATG 8429127 Score = 134 bits (148), Expect = 2e-26 Identities = 184/257 (72%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 7058 TCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGT 7117 ||||| || ||||| |||||||||||||||| || || |||| || | | || Sbjct 8434478 TCATCTGGATTAATACTTTTATTCAGTTCTTTGCCAGAGAAGAAATCTGAGAGAAGTTTC 8434419 Query 7118 TGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTA 7177 || | |||||| || || || |||||||| || | || || |||| |||| | |||| Sbjct 8434418 TGTACTTTCGGAATACGCGTTGATCCACCTACTAGTACAATGTCATGAACTTGAGCTTTA 8434359 Query 7178 TCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCC 7237 || ||||| | ||| || | || ||| || || || ||||| | |||||||| || Sbjct 8434358 TCCATCTTGGCGTCACGCAATGCTTTCTCAACCGGATCCATGGTTGAGCGGAACAAATCA 8434299 Query 7238 ATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTAT 7297 ||| ||||| |||||||| ||||| |||||| ||| || ||||| | || ||| | Sbjct 8434298 GCACATAGTTCTTCAAAACGGGCACGCGTAATGTTTGTGTAAAAATCGATCCCCTCGAAC 8434239 Query 7298 AACGAATCAATTTCAAT 7314 || |||||||| || || Sbjct 8434238 AAAGAATCAATCTCGAT 8434222 Score = 118 bits (130), Expect = 1e-21 Identities = 179/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACA 7653 ||||| || | ||| || || ||||| || || ||||||||||| ||||| || | |||| Sbjct 8433655 TTCTTGTCCAAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAGGACA 8433596 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || ||||| || | | | |||||| || |||||||| || || || || || || Sbjct 8433595 -TTTAGACCAGCGATTGCACCAGAATCTTTAGTTGCTTGTCGCTGTGAGTCATTGAAATA 8433537 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || ||||| || || || || ||| ||||| | ||| ||| | | ||| || | || Sbjct 8433536 TGCTGGGACTGTGACAACAGCATCCTTGACTGCATGACCAAGAAATGCTTCAGCCGTTTC 8433477 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833 |||||||| | |||||| |||||||| ||||| | | || |||||| || || Sbjct 8433476 CTTCATTTTAACCAAAACCATTGATGAAATTTCTTCTGGAGTGAAGGTTTTCGTCTCGCC 8433417 Query 7834 GTTAAAATCAAC 7845 || | ||||| Sbjct 8433416 CTTGTATTCAAC 8433405 Score = 116 bits (128), Expect = 5e-21 Identities = 237/345 (69%), Gaps = 14/345 (4%) Strand=Plus/Minus Query 6497 TCGACCGTTCCTTTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTC-----G 6550 |||| |||| |||||| |||| || || || ||||| |||| ||||| | | Sbjct 8435291 TCGATCGTTTGTTTCATATTGAATGCATAAGATT-CGAGAGCATTTTTCGCTGCAATACG 8435233 Query 6551 ACCTTTTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTT 6610 | |||| | || ||| |||| || | ||||| || || || || || ||||| Sbjct 8435232 ATCTTTCT---GTGCTT--CATCATCCGCCTTATATTTCTCAGCTTCCTGTACCATTCGC 8435178 Query 6611 TCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTT 6669 ||||| || || || || || | || || ||||| ||||| |||||||| ||| | ||| Sbjct 8435177 TCAATCTCATCCTTTGACAAACGTCCTTTGTCATTGGTAATTGTAATCTTGTTCTGTTTT 8435118 Query 6670 ACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCT 6729 || | | ||||||| || ||||||||||||||||| || |||| |||||| | Sbjct 8435117 -CCTGTTGATTTATCTTGTGCGGAAACATTCAAAATACCATTCGCGTCAATATCGAATGT 8435059 Query 6730 TACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACC 6789 || | |||||| || ||| | || || | ||||| || | || || ||| |||| Sbjct 8435058 GACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAATTCGAATTTACC 8434999 Query 6790 AAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGAC 6834 ||| | | | || || ||| | | ||||||||||||||| || Sbjct 8434998 AAGCAGATTATTGTCTTTCGTCATAGCACGTTCACCTTCATAAAC 8434954 Score = 105 bits (116), Expect = 8e-18 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 || ||||| ||||| || || ||||| || || ||||| || || || || ||||| ||| Sbjct 8428338 TTTTTATCTAGACCATATGCAATAGCAGCAGCAGTTGGCTCGTTGATGATTCGAAGGACA 8428279 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 |||||||||| ||| | |||||||||| || ||||||||||| ||||| || || || Sbjct 8428278 -TTCAGGCCAGAAATGGCACCCGCATCTTTGGTTGCTTGTCGTTGAGAATCATTGAAATA 8428220 Query 7714 GGCCGGGACCGTTACGACCGCGTCC 7738 || || || ||||| || || ||| Sbjct 8428219 CGCTGGTACAGTTACTACGGCATCC 8428195 Score = 96.9 bits (106), Expect = 4e-15 Identities = 181/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| ||| | || |||||||| || || ||||| |||| || || || ||||| Sbjct 8430088 TCATCATCAGCCTTGTACTTTTCGGCTTCCGCAACCATTCTTTCGATTTCATCCTTCGAC 8430029 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 || | || |||||||| ||||| |||||||| | || || | || ||||| | Sbjct 8430028 AAACGTCCTTTATCATTAGTAATTGTAATCTTATTATGCTTCCCAGTGGATTTATCCTGT 8429969 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || ||||| | |||||| |||||||| | ||| || | || | |||||||| | Sbjct 8429968 GCTGAGACATTTAGAATACCGTTTGCATCGATATCAAAAGTGACTTCGATTTGTGGAACA 8429909 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | ||||| || | | || ||| |||| | || | ||||| || Sbjct 8429908 CCACGAGGAGCAGGCGGAATTCCAGAAAGTTCGAATTTACCCAACAAGTTATTATCTCTC 8429849 Query 6809 GCCTTCTTACGTTCACCTTCATAGAC 6834 | | || |||||||||||| || || Sbjct 8429848 GTCATCGCACGTTCACCTTCGTAAAC 8429823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635127449006160