Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq2 161 1e-34
seq5 136 5e-27
>seq2
Length=28345163
Score = 161 bits (178), Expect = 1e-34
Identities = 166/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
|||||||| || || || |||||||| || || ||||||||||| || ||||| | |
Sbjct 17915140 TTCTTATCCAGCCCATAAGCGATAGCGGCTGCAGTTGGTTCATTGATGATACGGACAACA 17915081
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| ||||| |||||||| | |||||||| || ||||| ||||| | ||| ||||||||
Sbjct 17915080 TTGAGGCCGGCAATAGTACCTGCATCTTTGGTGGCTTGACGTTGTGCATCATTAAAGTAA 17915021
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774
|| || || || || || || | | |||| || || ||||| | |||||| || |||
Sbjct 17915020 GCAGGTACTGTGACAACTGCATGTTTCACTTCTTTTCCAAGATATGCTTCCGCAATTTCT 17914961
Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811
|||||||| |||||||||| |||||| |||||||
Sbjct 17914960 TTCATTTTACCGAGAACCATCGCTGAAATTTCTTCAG 17914924
Score = 91.5 bits (100), Expect = 2e-13
Identities = 116/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 184231 TTTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAAT 184290
|||||| | ||| ||||| ||||| || | ||||| |||||||| ||||| | ||
Sbjct 14161044 TTTACCACGAAGAGGAAATACACCATATTTGTCACGTCCAACAACCCCCAGACCTGAAAC 14161103
Query 184291 TGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGT 184350
|| | | ||| || ||||||||||| |||| |||||| ||||||| |||| | |
Sbjct 14161104 AGCCAACGATTTGGCTGAATCACCTTCCGTAAGAATAAGCGTACACTGTGCAGAATTCTT 14161163
Query 184351 GGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAATACCC 184390
||||| || | || ||||| || | |||||| | ||||
Sbjct 14161164 CGTACCAGCATCGTTAGCATCTTCCAATTTTGGCACACCC 14161203
>seq5
Length=16048563
Score = 136 bits (150), Expect = 5e-27
Identities = 186/260 (72%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 7056 CCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTT 7115
||||||| || ||||| |||| ||||||||||| || ||| |||| || | || ||
Sbjct 8429386 CCTCATCTGGATTAATGCTTTTGTTCAGTTCTTTTCCAGAAAAGAAATCGGAGAGCAATT 8429327
Query 7116 GTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATT 7175
||| | ||| || || || || || || || |||||||| || |||| || || | ||
Sbjct 8429326 TTTGTACTTTTGGAATACGAGTAGAACCGCCAACCAAAACAATATCATGCATTTGAGCTT 8429267
Query 7176 TATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGT 7235
|||| ||||| | || || | || ||| || || || ||||| | ||||||||| |
Sbjct 8429266 TATCCATCTTAGCATCACGCAATGCTTTCTCAACGGGATCCATGGTTGAACGGAACAAAT 8429207
Query 7236 CCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGT 7295
| ||| || || |||||||| || ||||| || || || || ||| ||||||
Sbjct 8429206 CAGCACAAAGCTCTTCAAAACGGGCTCGGGTGATACTAGTGTAAAAGTCAGTACCGTCGA 8429147
Query 7296 ATAACGAATCAATTTCAATG 7315
| | |||||||||||||||
Sbjct 8429146 AGAGTGAATCAATTTCAATG 8429127
Score = 134 bits (148), Expect = 2e-26
Identities = 184/257 (72%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 7058 TCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGT 7117
||||| || ||||| |||||||||||||||| || || |||| || | | ||
Sbjct 8434478 TCATCTGGATTAATACTTTTATTCAGTTCTTTGCCAGAGAAGAAATCTGAGAGAAGTTTC 8434419
Query 7118 TGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTA 7177
|| | |||||| || || || |||||||| || | || || |||| |||| | ||||
Sbjct 8434418 TGTACTTTCGGAATACGCGTTGATCCACCTACTAGTACAATGTCATGAACTTGAGCTTTA 8434359
Query 7178 TCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCC 7237
|| ||||| | ||| || | || ||| || || || ||||| | |||||||| ||
Sbjct 8434358 TCCATCTTGGCGTCACGCAATGCTTTCTCAACCGGATCCATGGTTGAGCGGAACAAATCA 8434299
Query 7238 ATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTAT 7297
||| ||||| |||||||| ||||| |||||| ||| || ||||| | || ||| |
Sbjct 8434298 GCACATAGTTCTTCAAAACGGGCACGCGTAATGTTTGTGTAAAAATCGATCCCCTCGAAC 8434239
Query 7298 AACGAATCAATTTCAAT 7314
|| |||||||| || ||
Sbjct 8434238 AAAGAATCAATCTCGAT 8434222
Score = 118 bits (130), Expect = 1e-21
Identities = 179/252 (71%), Gaps = 2/252 (1%)
Strand=Plus/Minus
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACA 7653
||||| || | ||| || || ||||| || || ||||||||||| ||||| || | ||||
Sbjct 8433655 TTCTTGTCCAAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAGGACA 8433596
Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713
|| || ||||| || | | | |||||| || |||||||| || || || || || ||
Sbjct 8433595 -TTTAGACCAGCGATTGCACCAGAATCTTTAGTTGCTTGTCGCTGTGAGTCATTGAAATA 8433537
Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773
|| ||||| || || || || ||| ||||| | ||| ||| | | ||| || | ||
Sbjct 8433536 TGCTGGGACTGTGACAACAGCATCCTTGACTGCATGACCAAGAAATGCTTCAGCCGTTTC 8433477
Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833
|||||||| | |||||| |||||||| ||||| | | || |||||| || ||
Sbjct 8433476 CTTCATTTTAACCAAAACCATTGATGAAATTTCTTCTGGAGTGAAGGTTTTCGTCTCGCC 8433417
Query 7834 GTTAAAATCAAC 7845
|| | |||||
Sbjct 8433416 CTTGTATTCAAC 8433405
Score = 116 bits (128), Expect = 5e-21
Identities = 237/345 (69%), Gaps = 14/345 (4%)
Strand=Plus/Minus
Query 6497 TCGACCGTTCCTTTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTC-----G 6550
|||| |||| |||||| |||| || || || ||||| |||| ||||| | |
Sbjct 8435291 TCGATCGTTTGTTTCATATTGAATGCATAAGATT-CGAGAGCATTTTTCGCTGCAATACG 8435233
Query 6551 ACCTTTTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTT 6610
| |||| | || ||| |||| || | ||||| || || || || || |||||
Sbjct 8435232 ATCTTTCT---GTGCTT--CATCATCCGCCTTATATTTCTCAGCTTCCTGTACCATTCGC 8435178
Query 6611 TCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTT 6669
||||| || || || || || | || || ||||| ||||| |||||||| ||| | |||
Sbjct 8435177 TCAATCTCATCCTTTGACAAACGTCCTTTGTCATTGGTAATTGTAATCTTGTTCTGTTTT 8435118
Query 6670 ACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCT 6729
|| | | ||||||| || ||||||||||||||||| || |||| |||||| |
Sbjct 8435117 -CCTGTTGATTTATCTTGTGCGGAAACATTCAAAATACCATTCGCGTCAATATCGAATGT 8435059
Query 6730 TACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACC 6789
|| | |||||| || ||| | || || | ||||| || | || || ||| ||||
Sbjct 8435058 GACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAATTCGAATTTACC 8434999
Query 6790 AAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGAC 6834
||| | | | || || ||| | | ||||||||||||||| ||
Sbjct 8434998 AAGCAGATTATTGTCTTTCGTCATAGCACGTTCACCTTCATAAAC 8434954
Score = 105 bits (116), Expect = 8e-18
Identities = 112/145 (77%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653
|| ||||| ||||| || || ||||| || || ||||| || || || || ||||| |||
Sbjct 8428338 TTTTTATCTAGACCATATGCAATAGCAGCAGCAGTTGGCTCGTTGATGATTCGAAGGACA 8428279
Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713
|||||||||| ||| | |||||||||| || ||||||||||| ||||| || || ||
Sbjct 8428278 -TTCAGGCCAGAAATGGCACCCGCATCTTTGGTTGCTTGTCGTTGAGAATCATTGAAATA 8428220
Query 7714 GGCCGGGACCGTTACGACCGCGTCC 7738
|| || || ||||| || || |||
Sbjct 8428219 CGCTGGTACAGTTACTACGGCATCC 8428195
Score = 96.9 bits (106), Expect = 4e-15
Identities = 181/266 (68%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628
||||| ||| | || |||||||| || || ||||| |||| || || || |||||
Sbjct 8430088 TCATCATCAGCCTTGTACTTTTCGGCTTCCGCAACCATTCTTTCGATTTCATCCTTCGAC 8430029
Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688
|| | || |||||||| ||||| |||||||| | || || | || ||||| |
Sbjct 8430028 AAACGTCCTTTATCATTAGTAATTGTAATCTTATTATGCTTCCCAGTGGATTTATCCTGT 8429969
Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748
|| ||||| | |||||| |||||||| | ||| || | || | |||||||| |
Sbjct 8429968 GCTGAGACATTTAGAATACCGTTTGCATCGATATCAAAAGTGACTTCGATTTGTGGAACA 8429909
Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808
|| | || || | ||||| || | | || ||| |||| | || | ||||| ||
Sbjct 8429908 CCACGAGGAGCAGGCGGAATTCCAGAAAGTTCGAATTTACCCAACAAGTTATTATCTCTC 8429849
Query 6809 GCCTTCTTACGTTCACCTTCATAGAC 6834
| | || |||||||||||| || ||
Sbjct 8429848 GTCATCGCACGTTCACCTTCGTAAAC 8429823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635127449006160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |