Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq2 131 4e-25
seq4 127 5e-24
seq136 100 6e-16
>seq2
Length=28345163
Score = 131 bits (144), Expect = 4e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| |||||||| || || |||||||||||||| ||||| | || || | || || ||
Sbjct 27365418 AACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTC 27365477
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
| ||| || || || ||||| |||||||| || || || |||||||| ||||| || ||
Sbjct 27365478 CAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTTATCCTG 27365537
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|||||| || || ||||| || || ||||| ||| ||||| | || | ||| ||
Sbjct 27365538 AATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTT 27365597
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| || |||||||| | |||||
Sbjct 27365598 GCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627
Score = 104 bits (114), Expect = 5e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| |||||||| | ||| |||||||| || ||||| ||||||||||| || |||||
Sbjct 27365804 TACCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCG 27365863
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|| || ||||| ||||| || || ||||||||| | || | ||| || || || |
Sbjct 27365864 CTTTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAA 27365923
Query 195119 AAGTTTTTACGAACACTTGCAT 195140
||||||||| || | ||||||
Sbjct 27365924 GAGTTTTTACAAAGATTTGCAT 27365945
Score = 104 bits (114), Expect = 5e-17
Identities = 115/152 (76%), Gaps = 1/152 (1%)
Strand=Plus/Plus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| || || || || || ||||| || || ||||| ||||| || ||||| || |||
Sbjct 27366661 TACCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTG 27366720
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|| || || ||||| ||||| || ||||||||||| |||| ||| ||||| ||||
Sbjct 27366721 CTTTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCA 27366780
Query 195119 AAGTTTTTACGAACACTTGCATTTATG-GTTA 195149
| || |||||||| | |||||| | || ||||
Sbjct 27366781 ATGTCTTTACGAAGATTTGCATGTTTGCGTTA 27366812
>seq4
Length=16644688
Score = 127 bits (140), Expect = 5e-24
Identities = 115/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|||||||| || ||||||||||| ||||| || || ||||| || || || ||||||||
Sbjct 3142843 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 3142784
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| || |||||||| || || || ||| || |||||||||| |||||| || |||
Sbjct 3142783 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 3142724
Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142
|| ||||| ||||| | ||||||||
Sbjct 3142723 AATGTTTTCACGAATATTTGCATTT 3142699
Score = 107 bits (118), Expect = 4e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
||||||| || || | ||| || || |||||||| |||||||||||||| ||||| ||
Sbjct 10332664 TACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCG 10332723
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|| || || ||||| || ||||| ||| || ||||| |||| ||||| || || |
Sbjct 10332724 CTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTTA 10332783
Query 195119 AAGTTTTTACGAACACTTGCAT 195140
|||| |||||||| | ||||||
Sbjct 10332784 AAGTCTTTACGAAAATTTGCAT 10332805
>seq136
Length=9508
Score = 100 bits (110), Expect = 6e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
|| |||| || || ||||| ||||| || ||||||||||| ||||||||||||||||| |
Sbjct 6192 GCATACCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCT 6133
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115
| ||| || || || || || || || ||| ||||| | || | || || ||||
Sbjct 6132 TGGCCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTG 6073
Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140
|||| ||||||| || | ||||||
Sbjct 6072 TCAACATTTTTACAAAAATTTGCAT 6048
Score = 87.8 bits (96), Expect = 4e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| || || | || |||||||| || || ||||| || || || || || ||||||
Sbjct 4851 TACCAGCAAAAACTAGGCGTTGTTGTTCCGGCGGAATACCCTCCTTATCCTGGATTTTTG 4792
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|| || ||||||| ||||| || |||||||||||| | | ||| ||||| ||||
Sbjct 4791 CTTTAACATTCTCAACCGTGTCTGACGCTTCCACTTCAAGAATGATCGTTTTTCCGGTCA 4732
Query 195119 AAGTTTTTACGAACACTTGCATTTATGGTTACT 195151
| || ||||| || | ||||| | || || ||
Sbjct 4731 ATGTCTTTACAAAGATCTGCATATTTGCTTTCT 4699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109472018932958
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |