Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 131 4e-25 seq4 127 5e-24 seq136 100 6e-16 >seq2 Length=28345163 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| |||||||| || || |||||||||||||| ||||| | || || | || || || Sbjct 27365418 AACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTC 27365477 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||| || || || ||||| |||||||| || || || |||||||| ||||| || || Sbjct 27365478 CAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTTATCCTG 27365537 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| || || ||||| || || ||||| ||| ||||| | || | ||| || Sbjct 27365538 AATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTT 27365597 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || |||||||| | ||||| Sbjct 27365598 GCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627 Score = 104 bits (114), Expect = 5e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| |||||||| | ||| |||||||| || ||||| ||||||||||| || ||||| Sbjct 27365804 TACCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCG 27365863 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || ||||| ||||| || || ||||||||| | || | ||| || || || | Sbjct 27365864 CTTTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAA 27365923 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||||||||| || | |||||| Sbjct 27365924 GAGTTTTTACAAAGATTTGCAT 27365945 Score = 104 bits (114), Expect = 5e-17 Identities = 115/152 (76%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || || || || ||||| || || ||||| ||||| || ||||| || ||| Sbjct 27366661 TACCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTG 27366720 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || || ||||| ||||| || ||||||||||| |||| ||| ||||| |||| Sbjct 27366721 CTTTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCA 27366780 Query 195119 AAGTTTTTACGAACACTTGCATTTATG-GTTA 195149 | || |||||||| | |||||| | || |||| Sbjct 27366781 ATGTCTTTACGAAGATTTGCATGTTTGCGTTA 27366812 >seq4 Length=16644688 Score = 127 bits (140), Expect = 5e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||| || ||||||||||| ||||| || || ||||| || || || |||||||| Sbjct 3142843 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 3142784 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || |||||||| || || || ||| || |||||||||| |||||| || ||| Sbjct 3142783 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 3142724 Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142 || ||||| ||||| | |||||||| Sbjct 3142723 AATGTTTTCACGAATATTTGCATTT 3142699 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||| || || | ||| || || |||||||| |||||||||||||| ||||| || Sbjct 10332664 TACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCG 10332723 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || || ||||| || ||||| ||| || ||||| |||| ||||| || || | Sbjct 10332724 CTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTTA 10332783 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 |||| |||||||| | |||||| Sbjct 10332784 AAGTCTTTACGAAAATTTGCAT 10332805 >seq136 Length=9508 Score = 100 bits (110), Expect = 6e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 || |||| || || ||||| ||||| || ||||||||||| ||||||||||||||||| | Sbjct 6192 GCATACCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCT 6133 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| || || || || || || || ||| ||||| | || | || || |||| Sbjct 6132 TGGCCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTG 6073 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||||| || | |||||| Sbjct 6072 TCAACATTTTTACAAAAATTTGCAT 6048 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || | || |||||||| || || ||||| || || || || || |||||| Sbjct 4851 TACCAGCAAAAACTAGGCGTTGTTGTTCCGGCGGAATACCCTCCTTATCCTGGATTTTTG 4792 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || ||||||| ||||| || |||||||||||| | | ||| ||||| |||| Sbjct 4791 CTTTAACATTCTCAACCGTGTCTGACGCTTCCACTTCAAGAATGATCGTTTTTCCGGTCA 4732 Query 195119 AAGTTTTTACGAACACTTGCATTTATGGTTACT 195151 | || ||||| || | ||||| | || || || Sbjct 4731 ATGTCTTTACAAAGATCTGCATATTTGCTTTCT 4699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109472018932958