Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 9e-11 >seq3 Length=25485961 Score = 82.4 bits (90), Expect = 9e-11 Identities = 167/243 (69%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 48114 GTATATAACTTCTCAAAT-TCATCCCCATACACATTATCTAACCCAGGACATTCATTAGG 48172 || || || ||||||||| || | ||| | || || ||||| || |||||| ||| Sbjct 17643542 GTGTACAATTTCTCAAATGTCTTGCCCCAGGA-ATCTTCCAACCCGGGGCATTCAGCAGG 17643600 Query 48173 ACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA 48232 |||||| |||||||| | ||| | ||| | ||| || | ||| |||||||| Sbjct 17643601 ACACATTAATGACCATATTTTATCGTCACGTACGCGCTCCATGAAAAGATCCGGTATCCA 17643660 Query 48233 AAGAGCTATAAATAAATCCCTA----GTTCTTAGTTCTTCATTGCCACTATTCCTTTTAA 48288 | | | | |||||||| | | ||||| ||||| ||| || | ||||| | Sbjct 17643661 TAAACCAAAGAATAAATCACGACAACGTTCT-AGTTCATCACCTACATTCTTCCTC---A 17643716 Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTG 48348 |||| ||||| || | |||||||||||||||||||| || || | || | | | |||| Sbjct 17643717 GTTCTAGAAATTCAAAAATATCAGCATGCCATGGTTCCAAGTAAACGGCAAATGCGCCTG 17643776 Query 48349 GTC 48351 ||| Sbjct 17643777 GTC 17643779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562104064233360