Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq3 82.4 9e-11
>seq3
Length=25485961
Score = 82.4 bits (90), Expect = 9e-11
Identities = 167/243 (69%), Gaps = 10/243 (4%)
Strand=Plus/Plus
Query 48114 GTATATAACTTCTCAAAT-TCATCCCCATACACATTATCTAACCCAGGACATTCATTAGG 48172
|| || || ||||||||| || | ||| | || || ||||| || |||||| |||
Sbjct 17643542 GTGTACAATTTCTCAAATGTCTTGCCCCAGGA-ATCTTCCAACCCGGGGCATTCAGCAGG 17643600
Query 48173 ACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA 48232
|||||| |||||||| | ||| | ||| | ||| || | ||| ||||||||
Sbjct 17643601 ACACATTAATGACCATATTTTATCGTCACGTACGCGCTCCATGAAAAGATCCGGTATCCA 17643660
Query 48233 AAGAGCTATAAATAAATCCCTA----GTTCTTAGTTCTTCATTGCCACTATTCCTTTTAA 48288
| | | | |||||||| | | ||||| ||||| ||| || | ||||| |
Sbjct 17643661 TAAACCAAAGAATAAATCACGACAACGTTCT-AGTTCATCACCTACATTCTTCCTC---A 17643716
Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTG 48348
|||| ||||| || | |||||||||||||||||||| || || | || | | | ||||
Sbjct 17643717 GTTCTAGAAATTCAAAAATATCAGCATGCCATGGTTCCAAGTAAACGGCAAATGCGCCTG 17643776
Query 48349 GTC 48351
|||
Sbjct 17643777 GTC 17643779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562104064233360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |