Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5 170 2e-36 seq2 140 3e-27 seq136 93.3 3e-13 seq4 86.0 5e-11 >seq5 Length=16048563 Score = 170 bits (188), Expect = 2e-36 Identities = 255/358 (71%), Gaps = 7/358 (2%) Strand=Plus/Plus Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 |||| ||||| ||||| || ||||| | | ||| ||||| | || ||| ||||| Sbjct 8433288 ATTTCAGATGCGAAACGATTGATTGGTCGTAAATTTGATGATGGATCAGTACAGTCAGAT 8433347 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAAGCT 550291 ||||| || ||||| ||| || | || |||| | ||| ||||| | | || || | Sbjct 8433348 ATGAAACACTGGCCATTCAAAGTCGTGAATGCTGGTGGTGGTAAACCAAA-AGTGCAGGT 8433406 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCAC--CAGAACAAATTTCATCTATGGTTTTAA 550349 |||| | || || ||||| ||||| |||||||||| |||||||| Sbjct 8433407 TGAATACAAGGGCGAGACGAA-AACCTTCACTCCAGAAGAAATTTCATCAATGGTTTTGG 8433465 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 | |||||||| |||| || || ||| ||||||| | ||| | |||||| || | | Sbjct 8433466 TTAAAATGAAGGAAACGGCTGAAGCATTTCTTGGTCATGCAGTCAAGGATGCTGTTGTCA 8433525 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || ||||||||||| ||||||||||| || ||||| ||||||||| |||| || | Sbjct 8433526 CAGTCCCAGCATATTTCAATGACTCACAGCGACAAGCAACTAAAGATTCTGGTGCAATCG 8433585 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||| || ||||| || || |||||||||||||| || || || || |||| ||||| Sbjct 8433586 CTGGTCTAAATGTCCTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGG 8433643 Score = 134 bits (148), Expect = 1e-25 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| ||| ||||||||||||| ||||| ||||| || ||||| ||||| || ||||| Sbjct 8428195 GGATGCCGTAGTAACTGTACCAGCGTATTTCAATGATTCTCAACGACAAGCAACCAAAGA 8428254 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| || ||| |||| || ||||| ||||| || ||||| || || ||||||||||| Sbjct 8428255 TGCGGGTGCCATTTCTGGCCTGAATGTCCTTCGAATCATCAACGAGCCAACTGCTGCTGC 8428314 Query 550516 ACTTGCATATGGACTTGATAAA 550537 |||||||||| || |||||| Sbjct 8428315 TATTGCATATGGTCTAGATAAA 8428336 Score = 105 bits (116), Expect = 5e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 552439 TTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTA 552498 |||| ||| |||||| ||| | | || ||||| ||||||| ||||||| || Sbjct 8434949 TTCAGGTTTATGAAGGTGAACGTGCTATGACGAAAGACAATAATCTGCTTGGTAAATTCG 8435008 Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558 | || || ||||| ||||||||||| || || |||||||||||||| || ||||||| Sbjct 8435009 AATTGTCTGGAATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCACATTCGATA 8435068 Query 552559 TCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 | || || ||||| ||||||||||| | || |||||||| Sbjct 8435069 TTGACGCGAATGGTATTTTGAATGTTTCCGCACAAGATAAATC 8435111 >seq2 Length=28345163 Score = 140 bits (154), Expect = 3e-27 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 || ||| |||||||| | |||||| | ||||||||| ||| || || | | || Sbjct 17914923 CCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAATTGCGGAAGCATATCTT 17914982 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || ||||||| | ||||||| | || ||||| || || |||||||| |||||||| Sbjct 17914983 GGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTTTAATGATGCACAACGT 17915042 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 ||||| || |||||||| || |||||| || || |||||| | ||||| ||||||||| Sbjct 17915043 CAAGCCACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTCCGTATCATCAATGAA 17915102 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || ||||| || || | || ||||| || ||||| Sbjct 17915103 CCAACTGCAGCCGCTATCGCTTATGGGCTGGATAA 17915137 Score = 109 bits (120), Expect = 4e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || || ||||| || |||||| |||||| ||||| | || || | Sbjct 27365410 AGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGA 27365469 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || || | |||||||||||||| || |||| ||||||||| || ||||| || ||| Sbjct 27365470 CCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCT 27365529 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435 ||||| |||||||| |||||| ||| || ||||| | | ||| ||| | || Sbjct 27365530 TTATCCTGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTAC-TTCCAACGT 27365588 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||||| ||||| || || || |||||||| ||||| Sbjct 27365589 TATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627 Score = 91.5 bits (100), Expect = 1e-12 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 ||||||||||| ||||| || |||||||| ||| | || || | | || |||| || Sbjct 17916182 AATCCAGATGAAGCTGTAGCATATGGTGCAGCAGTCCAGGCTGGTGTTATTTCGGG---- 17916237 Query 552270 ACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328 ||| |||| ||| | |||||| | ||||||| | |||| | |||||||| | Sbjct 17916238 --TGAAGAAAGCACTGGTGAC-ATTGTATTATTAGATGTGAATCCTTTGACTCTTGGTAT 17916294 Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388 ||||||||||| ||| | ||||| || ||||| | || || ||| ||| ||| || Sbjct 17916295 TGAAACAGTTGGTGGTGTAATGACCAAACTTATTCAAAGGAACACTGTTATCCCTACCAA 17916354 Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442 ||| || | || |||||| | |||||||| | | ||||| ||||| Sbjct 17916355 GAAAAGTCAGATCTTCTCTACGGCAGCTGATAATCAGCCAACAGTTACCATTCA 17916408 Score = 87.8 bits (96), Expect = 1e-11 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || || ||||| | || |||||||| || |||||||| ||||| || || || || | Sbjct 27366326 CCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATTCCCTCTTTGTCCTGGATCTTCGCT 27366385 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||| || ||||||| || | || ||| | || | |||||||||||||| Sbjct 27366386 TTAACGTTCTCGATGGTATCAGA-TGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAG 27366444 Query 563454 AGTTTTAACGAAAATTTGCATA 563475 |||||| || |||||||||||| Sbjct 27366445 AGTTTTTACAAAAATTTGCATA 27366466 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/139 (74%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 361703 AGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCC 361762 || |||||||| | | || || |||||||| || || || | ||||||||| || Sbjct 17915131 AGCCCATAAGCGATAGCGGCTGCAGTTGGTTCATTGATGATACGGACAACATTGAGGCCG 17915072 Query 361763 GCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACA 361822 || || | ||||||| |||||||||||||||||||||||||| || ||||| || Sbjct 17915071 GCAATAGTACCTGCATCTTTGGTGGCTTGACGTTGTGCATCATTAAAGTAAGCAGGTACT 17915012 Query 361823 GTAATCACTGC-TTTTTCA 361840 || | ||||| | ||||| Sbjct 17915011 GTGACAACTGCATGTTTCA 17914993 >seq136 Length=9508 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||||||||| | ||||||||| ||||||||||||||||| |||||||| || Sbjct 6187 CCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCC 6128 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGA 563454 ||||| || |||||||||| | | ||| | ||| | ||||| || || | Sbjct 6127 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTCAAC 6068 Query 563455 GTTTTAACGAAAATTTGCATA 563475 |||| || |||||||||||| Sbjct 6067 ATTTTTACAAAAATTTGCATA 6047 >seq4 Length=16644688 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | || |||||||| ||||| || |||||||| || ||||| || | Sbjct 10332666 CCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCGCT 10332725 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||||| ||||| | | || | | || || |||| || |||||||| | Sbjct 10332726 TTTACATTTTCAATCGTATCCGAG-GATTCGACCTCAAGCGTAATTGTCTTACCAGTTAA 10332784 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| || |||||||||||||| Sbjct 10332785 AGTCTTTACGAAAATTTGCAT 10332805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029260355840260