Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq5 170 2e-36
seq2 140 3e-27
seq136 93.3 3e-13
seq4 86.0 5e-11
>seq5
Length=16048563
Score = 170 bits (188), Expect = 2e-36
Identities = 255/358 (71%), Gaps = 7/358 (2%)
Strand=Plus/Plus
Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234
|||| ||||| ||||| || ||||| | | ||| ||||| | || ||| |||||
Sbjct 8433288 ATTTCAGATGCGAAACGATTGATTGGTCGTAAATTTGATGATGGATCAGTACAGTCAGAT 8433347
Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAAGCT 550291
||||| || ||||| ||| || | || |||| | ||| ||||| | | || || |
Sbjct 8433348 ATGAAACACTGGCCATTCAAAGTCGTGAATGCTGGTGGTGGTAAACCAAA-AGTGCAGGT 8433406
Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCAC--CAGAACAAATTTCATCTATGGTTTTAA 550349
|||| | || || ||||| ||||| |||||||||| ||||||||
Sbjct 8433407 TGAATACAAGGGCGAGACGAA-AACCTTCACTCCAGAAGAAATTTCATCAATGGTTTTGG 8433465
Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409
| |||||||| |||| || || ||| ||||||| | ||| | |||||| || | |
Sbjct 8433466 TTAAAATGAAGGAAACGGCTGAAGCATTTCTTGGTCATGCAGTCAAGGATGCTGTTGTCA 8433525
Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469
| || ||||||||||| ||||||||||| || ||||| ||||||||| |||| || |
Sbjct 8433526 CAGTCCCAGCATATTTCAATGACTCACAGCGACAAGCAACTAAAGATTCTGGTGCAATCG 8433585
Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
|||| || ||||| || || |||||||||||||| || || || || |||| |||||
Sbjct 8433586 CTGGTCTAAATGTCCTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGG 8433643
Score = 134 bits (148), Expect = 1e-25
Identities = 115/142 (81%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455
|||||| ||| ||||||||||||| ||||| ||||| || ||||| ||||| || |||||
Sbjct 8428195 GGATGCCGTAGTAACTGTACCAGCGTATTTCAATGATTCTCAACGACAAGCAACCAAAGA 8428254
Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515
||| || ||| |||| || ||||| ||||| || ||||| || || |||||||||||
Sbjct 8428255 TGCGGGTGCCATTTCTGGCCTGAATGTCCTTCGAATCATCAACGAGCCAACTGCTGCTGC 8428314
Query 550516 ACTTGCATATGGACTTGATAAA 550537
|||||||||| || ||||||
Sbjct 8428315 TATTGCATATGGTCTAGATAAA 8428336
Score = 105 bits (116), Expect = 5e-17
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 552439 TTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTA 552498
|||| ||| |||||| ||| | | || ||||| ||||||| ||||||| ||
Sbjct 8434949 TTCAGGTTTATGAAGGTGAACGTGCTATGACGAAAGACAATAATCTGCTTGGTAAATTCG 8435008
Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558
| || || ||||| ||||||||||| || || |||||||||||||| || |||||||
Sbjct 8435009 AATTGTCTGGAATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCACATTCGATA 8435068
Query 552559 TCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601
| || || ||||| ||||||||||| | || ||||||||
Sbjct 8435069 TTGACGCGAATGGTATTTTGAATGTTTCCGCACAAGATAAATC 8435111
>seq2
Length=28345163
Score = 140 bits (154), Expect = 3e-27
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381
|| ||| |||||||| | |||||| | ||||||||| ||| || || | | ||
Sbjct 17914923 CCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAATTGCGGAAGCATATCTT 17914982
Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441
|| ||||||| | ||||||| | || ||||| || || |||||||| ||||||||
Sbjct 17914983 GGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTTTAATGATGCACAACGT 17915042
Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501
||||| || |||||||| || |||||| || || |||||| | ||||| |||||||||
Sbjct 17915043 CAAGCCACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTCCGTATCATCAATGAA 17915102
Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
|| ||||| || || | || ||||| || |||||
Sbjct 17915103 CCAACTGCAGCCGCTATCGCTTATGGGCTGGATAA 17915137
Score = 109 bits (120), Expect = 4e-18
Identities = 157/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
||||| || || || ||||| || |||||| |||||| ||||| | || || |
Sbjct 27365410 AGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGA 27365469
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
|| || | |||||||||||||| || |||| ||||||||| || ||||| || |||
Sbjct 27365470 CCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCT 27365529
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435
||||| |||||||| |||||| ||| || ||||| | | ||| ||| | ||
Sbjct 27365530 TTATCCTGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTAC-TTCCAACGT 27365588
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| ||||| ||||| || || || |||||||| |||||
Sbjct 27365589 TATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627
Score = 91.5 bits (100), Expect = 1e-12
Identities = 162/234 (69%), Gaps = 8/234 (3%)
Strand=Plus/Plus
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269
||||||||||| ||||| || |||||||| ||| | || || | | || |||| ||
Sbjct 17916182 AATCCAGATGAAGCTGTAGCATATGGTGCAGCAGTCCAGGCTGGTGTTATTTCGGG---- 17916237
Query 552270 ACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328
||| |||| ||| | |||||| | ||||||| | |||| | |||||||| |
Sbjct 17916238 --TGAAGAAAGCACTGGTGAC-ATTGTATTATTAGATGTGAATCCTTTGACTCTTGGTAT 17916294
Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388
||||||||||| ||| | ||||| || ||||| | || || ||| ||| ||| ||
Sbjct 17916295 TGAAACAGTTGGTGGTGTAATGACCAAACTTATTCAAAGGAACACTGTTATCCCTACCAA 17916354
Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442
||| || | || |||||| | |||||||| | | ||||| |||||
Sbjct 17916355 GAAAAGTCAGATCTTCTCTACGGCAGCTGATAATCAGCCAACAGTTACCATTCA 17916408
Score = 87.8 bits (96), Expect = 1e-11
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| || ||||| | || |||||||| || |||||||| ||||| || || || || |
Sbjct 27366326 CCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATTCCCTCTTTGTCCTGGATCTTCGCT 27366385
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||| || ||||||| || | || ||| | || | ||||||||||||||
Sbjct 27366386 TTAACGTTCTCGATGGTATCAGA-TGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAG 27366444
Query 563454 AGTTTTAACGAAAATTTGCATA 563475
|||||| || ||||||||||||
Sbjct 27366445 AGTTTTTACAAAAATTTGCATA 27366466
Score = 86.0 bits (94), Expect = 5e-11
Identities = 103/139 (74%), Gaps = 1/139 (1%)
Strand=Plus/Minus
Query 361703 AGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCC 361762
|| |||||||| | | || || |||||||| || || || | ||||||||| ||
Sbjct 17915131 AGCCCATAAGCGATAGCGGCTGCAGTTGGTTCATTGATGATACGGACAACATTGAGGCCG 17915072
Query 361763 GCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACA 361822
|| || | ||||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct 17915071 GCAATAGTACCTGCATCTTTGGTGGCTTGACGTTGTGCATCATTAAAGTAAGCAGGTACT 17915012
Query 361823 GTAATCACTGC-TTTTTCA 361840
|| | ||||| | |||||
Sbjct 17915011 GTGACAACTGCATGTTTCA 17914993
>seq136
Length=9508
Score = 93.3 bits (102), Expect = 3e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| ||||||||||| | ||||||||| ||||||||||||||||| |||||||| ||
Sbjct 6187 CCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCC 6128
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGA 563454
||||| || |||||||||| | | ||| | ||| | ||||| || || |
Sbjct 6127 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTCAAC 6068
Query 563455 GTTTTAACGAAAATTTGCATA 563475
|||| || ||||||||||||
Sbjct 6067 ATTTTTACAAAAATTTGCATA 6047
>seq4
Length=16644688
Score = 86.0 bits (94), Expect = 5e-11
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| | || |||||||| ||||| || |||||||| || ||||| || |
Sbjct 10332666 CCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCGCT 10332725
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||||| ||||| | | || | | || || |||| || |||||||| |
Sbjct 10332726 TTTACATTTTCAATCGTATCCGAG-GATTCGACCTCAAGCGTAATTGTCTTACCAGTTAA 10332784
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||| || ||||||||||||||
Sbjct 10332785 AGTCTTTACGAAAATTTGCAT 10332805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029260355840260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |