Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq2 134 1e-26
seq136 122 7e-23
seq100 116 3e-21
seq4 111 1e-19
>seq2
Length=28345163
Score = 134 bits (148), Expect = 1e-26
Identities = 119/149 (80%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| |||| ||||||||||| |||||||| ||||| |||||||| || |||
Sbjct 27366661 TACCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTG 27366720
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||| ||| |||| | ||||| |||| |||||||||||||| | |||||| ||||| |
Sbjct 27366721 CTTTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCA 27366780
Query 101448 AAGTTTTTACAAATATCTGCATGGTTACG 101476
| || ||||| || || |||||| || ||
Sbjct 27366781 ATGTCTTTACGAAGATTTGCATGTTTGCG 27366809
Score = 131 bits (144), Expect = 1e-25
Identities = 159/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| | ||||| || ||||||||||| ||||| ||||| | | || | |
Sbjct 27365412 ACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACC 27365471
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
|| ||||| || || || ||||| || | || || ||||| || |||||||| |||||
Sbjct 27365472 GTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTT 27365531
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
||| |||||||| ||||||| | || | ||| || || | ||| ||||| | || |
Sbjct 27365532 ATCCTGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTAT 27365591
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
||||||||| || | || ||||| || |||||||||
Sbjct 27365592 CGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCATG 27365628
Score = 113 bits (124), Expect = 4e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| || || ||||| |||||||| || || ||||| |||||||| || || |||||
Sbjct 27365804 TACCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCG 27365863
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||| ||| | || | || ||||| | ||||||||| | |||| |||||| ||||| |
Sbjct 27365864 CTTTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAA 27365923
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
|||||||||||| || |||||
Sbjct 27365924 GAGTTTTTACAAAGATTTGCAT 27365945
Score = 89.7 bits (98), Expect = 4e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| || || ||||| ||||| ||||| || ||||| || ||||| || || || ||
Sbjct 27366324 TACCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATTCCCTCTTTGTCCTGGATCTTCG 27366383
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||| || | || | || ||||| | ||||||||| | |||| ||||| || || |
Sbjct 27366384 CTTTAACGTTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAA 27366443
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
|||||||||||| || |||||
Sbjct 27366444 GAGTTTTTACAAAAATTTGCAT 27366465
>seq136
Length=9508
Score = 122 bits (134), Expect = 7e-23
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| | | || ||||| || |||||||| || || ||||| || ||||||
Sbjct 4851 TACCAGCAAAAACTAGGCGTTGTTGTTCCGGCGGAATACCCTCCTTATCCTGGATTTTTG 4792
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||| ||| | || || ||||| |||| ||||||||||||| ||| |||||| ||||| |
Sbjct 4791 CTTTAACATTCTCAACCGTGTCTGACGCTTCCACTTCAAGAATGATCGTTTTTCCGGTCA 4732
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
| || |||||||| ||||||||
Sbjct 4731 ATGTCTTTACAAAGATCTGCAT 4710
>seq100
Length=12629
Score = 116 bits (128), Expect = 3e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||| |||| || | || ||| ||||| ||||||| |||||||| |||||||| |
Sbjct 6481 TTACCATCAAAAATAAGACACTGCTGATCTAGCGGAATTCCTTCTTTTTCTTGAATCCTG 6540
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
| ||||||||||| | || ||||| ||||| ||||| | ||||| |||||||| |
Sbjct 6541 TCCTTTACAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCCTTC 6600
Query 101447 AAAGTTTTTACAAATATCTGCATG 101470
|| ||||||||||| || ||||||
Sbjct 6601 AACGTTTTTACAAAAATTTGCATG 6624
>seq4
Length=16644688
Score = 111 bits (122), Expect = 1e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||||||||| ||||| ||||| ||||| || || ||||||||||| || ||||| ||
Sbjct 10332664 TACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCG 10332723
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| |||| | || || || | ||| || ||||| || | || || || ||||
Sbjct 10332724 CTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTTA 10332783
Query 101448 AAGTTTTTACAAATATCTGCATGGTT 101473
|||| ||||| || || |||||| ||
Sbjct 10332784 AAGTCTTTACGAAAATTTGCATGATT 10332809
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||||||||| || | || || || || || || ||||| || ||||| ||||||||
Sbjct 3142843 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 3142784
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | ||| ||||||| ||| || ||||| || | ||| ||||| ||
Sbjct 3142783 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 3142724
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
|| ||||| || ||||| |||||
Sbjct 3142723 AATGTTTTCACGAATATTTGCAT 3142701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396275144820618
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |