Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq5 214 1e-49
seq2 168 4e-36
seq136 98.7 6e-15
seq4 89.7 3e-12
>seq5
Length=16048563
Score = 214 bits (236), Expect = 1e-49
Identities = 271/370 (73%), Gaps = 7/370 (2%)
Strand=Plus/Plus
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
|||| ||||| ||| |||||||||||||||| ||||||||| | || || || |||
Sbjct 8433288 ATTTCAGATGCGAAACGATTGATTGGTCGTAAATTTGATGATGGATCAGTACAGTCAGAT 8433347
Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGT---AAACCATATATAGAAGC- 474627
||| || ||||| || || || | |||| ||||||| |||||| | | | |
Sbjct 8433348 ATGAAACACTGGCCATTCAAAGTCGTGAATGCTGGTGGTGGTAAACCAAAAGTGCAGGTT 8433407
Query 474628 -AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686
|||||| | || || || ||| || | || ||| ||||||| ||||||||||| |
Sbjct 8433408 GAATACAAG--GGCGAGACGAAAACCTTCACTCCAGAAGAAATTTCATCAATGGTTTTGG 8433465
Query 474687 CCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTA 474746
|||||||| |||| || ||| |||||| || | ||| | ||||| || | |
Sbjct 8433466 TTAAAATGAAGGAAACGGCTGAAGCATTTCTTGGTCATGCAGTCAAGGATGCTGTTGTCA 8433525
Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806
| || ||||||||||| ||||| || || || ||||||||||||||| | || ||| |
Sbjct 8433526 CAGTCCCAGCATATTTCAATGACTCACAGCGACAAGCAACTAAAGATTCTGGTGCAATCG 8433585
Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTC 474866
| ||||| ||||| | || ||||| |||||||||||||||||||| |||| ||||||
Sbjct 8433586 CTGGTCTAAATGTCCTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGGTT 8433645
Query 474867 TTGATAAGAA 474876
| || |||||
Sbjct 8433646 TGGACAAGAA 8433655
Score = 114 bits (126), Expect = 8e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793
||||| ||| | ||||| ||||| ||||| |||||||||||||| |||||||| ||||||
Sbjct 8428196 GATGCCGTAGTAACTGTACCAGCGTATTTCAATGATTCTCAACGACAAGCAACCAAAGAT 8428255
Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853
||||| ||| | || || ||||| | || || || || || ||||| || || ||
Sbjct 8428256 GCGGGTGCCATTTCTGGCCTGAATGTCCTTCGAATCATCAACGAGCCAACTGCTGCTGCT 8428315
Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876
|||| |||||||| ||||| ||
Sbjct 8428316 ATTGCATATGGTCTAGATAAAAA 8428338
Score = 95.1 bits (104), Expect = 8e-14
Identities = 133/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
|| ||||| |||||||| | || ||||| ||||| ||||| ||||||||||| ||||||
Sbjct 8429886 GGAATTCCGCCTGCTCCTCGTGGTGTTCCACAAATCGAAGTCACTTTTGATATCGATGCA 8429945
Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACT 476209
|| |||||||| ||||| | || |||||||| | | ||| ||| || || ||
Sbjct 8429946 AACGGTATTCTAAATGTCTCAGCACAGGATAAATCCACTGGGAAGCATAATAAGATTACA 8430005
Query 476210 ATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCC 476269
||||| || || || | || | | || |||| || | ||||||| ||||||
Sbjct 8430006 ATTACTAATGATAAAGGACGTTTGTCGAAGGATGAAATCGAAAGAATGGTTGCGGAAGCC 8430065
Query 476270 AAAGAGT 476276
|| |||
Sbjct 8430066 GAAAAGT 8430072
Score = 95.1 bits (104), Expect = 8e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 474412 AGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACATCTTATTGGAGA 474471
|||||| ||||||||||||||||||| | ||||| || ||||||| |||||||| ||
Sbjct 8432923 AGGTAACCGAACAACACCATCATATGTGGCATTTACCGACACTGAACGCCTTATTGGTGA 8432982
Query 474472 TGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTG 474518
||| || ||| |||| | |||| ||||| ||||||| ||||||
Sbjct 8432983 TGCGGCCAAAAATCAGGTTGCAATGAATCCACATAATACTGTTTTTG 8433029
>seq2
Length=28345163
Score = 168 bits (186), Expect = 4e-36
Identities = 168/218 (77%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 474659 CCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTT 474718
|| ||| ||||||| | |||||| | | ||||||||| ||| ||| ||||||||
Sbjct 17914923 CCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAATTGCGGAAGCATATCTT 17914982
Query 474719 GGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGT 474778
||| ||||||| | ||||||| | || || || || || ||||||||| | ||||||
Sbjct 17914983 GGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTTTAATGATGCACAACGT 17915042
Query 474779 CAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAA 474838
||||| || |||||||| || | ||||| || || |||||| | ||||| || ||||||
Sbjct 17915043 CAAGCCACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTCCGTATCATCAATGAA 17915102
Query 474839 CCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876
||||| |||||||| | |||||||| || ||||||||
Sbjct 17915103 CCAACTGCAGCCGCTATCGCTTATGGGCTGGATAAGAA 17915140
Score = 98.7 bits (108), Expect = 6e-15
Identities = 106/138 (77%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| || || |||||||| || ||||| |||||||| ||||| |||||| |
Sbjct 27366663 CCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTGCT 27366722
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||||| || || | | | | |||||| ||||| ||||| ||||| |
Sbjct 27366723 TTAACATTTTCAATCGTGTCTGACGCCTCCA-CTTCAAGAGTAATCGTTTTTCCGGTCAA 27366781
Query 480752 AGTCTTAACGAAAATTTG 480769
||||| ||||| |||||
Sbjct 27366782 TGTCTTTACGAAGATTTG 27366799
Score = 91.5 bits (100), Expect = 1e-12
Identities = 165/242 (68%), Gaps = 6/242 (2%)
Strand=Plus/Plus
Query 474359 AGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAAT 474418
|||||||| | ||||| |||||||| ||| ||||| ||||||||||| |||||||||
Sbjct 17914527 AGTTGTGTTGGTGTTTATAAAAATGGTCGAGTGGAAATCATTGCCAATGAACAAGGTAAT 17914586
Query 474419 AGAACAACACCATCATATGTTTCTTTTAC------TGAAACTGAACATCTTATTGGAGAT 474472
|| | || ||||| || || | ||||| || ||| | ||||||||| ||
Sbjct 17914587 AGGATCACGCCATCGTACGTAGCATTTACTGGTGATGGTGGTGAGCGTCTTATTGGCGAC 17914646
Query 474473 GCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTG 474532
|| || ||| | || || | ||||| | || || | || |||| ||| | |||
Sbjct 17914647 GCAGCCAAAAACCAGTTAACAACAAATCCGGAAAACACAGTCTTCGATGTCAAACGCTTG 17914706
Query 474533 ATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAG 474592
||||| || | | | ||| | ||||| ||| ||||| || |||||||| ||
Sbjct 17914707 ATTGGACGAGAGTACAAAGATTCGACTGTACAACAAGATATCAAACACTGGCCTTTCAAT 17914766
Query 474593 GT 474594
||
Sbjct 17914767 GT 17914768
Score = 89.7 bits (98), Expect = 3e-12
Identities = 118/161 (73%), Gaps = 2/161 (1%)
Strand=Plus/Minus
Query 290843 GCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCT 290902
||||| ||||||||||| || || | | |||| || || ||||| | | | ||||
Sbjct 17915113 GCTGCAGTTGGTTCATTGATGATACGGACAACATTGAGGCCGGCAATAGTACCTGCATCT 17915054
Query 290903 AAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCtttttcc 290962
|| || || ||||| ||||||||||| |||||||| ||||| | ||| || | || |
Sbjct 17915053 TTGGTGGCTTGACGTTGTGCATCATTAAAGTAAGCAGGTACTGTGACAACTGCATGTTTC 17914994
Query 290963 actttctttttcaa-ataattttctgccatttgttttattt 291002
|| ||||||| ||| ||| ||| || |||| ||| ||||
Sbjct 17914993 AC-TTCTTTTCCAAGATATGCTTCCGCAATTTCTTTCATTT 17914954
>seq136
Length=9508
Score = 98.7 bits (108), Expect = 6e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
|||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 6187 CCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCC 6128
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| ||| || ||||||| | | | ||| | || || ||||| || || |
Sbjct 6127 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTCAAC 6068
Query 480753 GTCTTAACGAAAATTTG 480769
| || || ||||||||
Sbjct 6067 ATTTTTACAAAAATTTG 6051
>seq4
Length=16644688
Score = 89.7 bits (98), Expect = 3e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
|| |||||||| | || || ||||| ||||| || ||||| ||||| |||||||| |
Sbjct 10332666 CCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCGCT 10332725
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| |||||| ||||| | | | ||||| ||||| || ||||| || | |
Sbjct 10332726 TTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTTAAA 10332785
Query 480753 GTCTTAACGAAAATTTG 480769
||||| |||||||||||
Sbjct 10332786 GTCTTTACGAAAATTTG 10332802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268150288869752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |