Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5 214 1e-49 seq2 168 4e-36 seq136 98.7 6e-15 seq4 89.7 3e-12 >seq5 Length=16048563 Score = 214 bits (236), Expect = 1e-49 Identities = 271/370 (73%), Gaps = 7/370 (2%) Strand=Plus/Plus Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 |||| ||||| ||| |||||||||||||||| ||||||||| | || || || ||| Sbjct 8433288 ATTTCAGATGCGAAACGATTGATTGGTCGTAAATTTGATGATGGATCAGTACAGTCAGAT 8433347 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGT---AAACCATATATAGAAGC- 474627 ||| || ||||| || || || | |||| ||||||| |||||| | | | | Sbjct 8433348 ATGAAACACTGGCCATTCAAAGTCGTGAATGCTGGTGGTGGTAAACCAAAAGTGCAGGTT 8433407 Query 474628 -AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 |||||| | || || || ||| || | || ||| ||||||| ||||||||||| | Sbjct 8433408 GAATACAAG--GGCGAGACGAAAACCTTCACTCCAGAAGAAATTTCATCAATGGTTTTGG 8433465 Query 474687 CCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTA 474746 |||||||| |||| || ||| |||||| || | ||| | ||||| || | | Sbjct 8433466 TTAAAATGAAGGAAACGGCTGAAGCATTTCTTGGTCATGCAGTCAAGGATGCTGTTGTCA 8433525 Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806 | || ||||||||||| ||||| || || || ||||||||||||||| | || ||| | Sbjct 8433526 CAGTCCCAGCATATTTCAATGACTCACAGCGACAAGCAACTAAAGATTCTGGTGCAATCG 8433585 Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTC 474866 | ||||| ||||| | || ||||| |||||||||||||||||||| |||| |||||| Sbjct 8433586 CTGGTCTAAATGTCCTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGGTT 8433645 Query 474867 TTGATAAGAA 474876 | || ||||| Sbjct 8433646 TGGACAAGAA 8433655 Score = 114 bits (126), Expect = 8e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| ||| | ||||| ||||| ||||| |||||||||||||| |||||||| |||||| Sbjct 8428196 GATGCCGTAGTAACTGTACCAGCGTATTTCAATGATTCTCAACGACAAGCAACCAAAGAT 8428255 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 ||||| ||| | || || ||||| | || || || || || ||||| || || || Sbjct 8428256 GCGGGTGCCATTTCTGGCCTGAATGTCCTTCGAATCATCAACGAGCCAACTGCTGCTGCT 8428315 Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876 |||| |||||||| ||||| || Sbjct 8428316 ATTGCATATGGTCTAGATAAAAA 8428338 Score = 95.1 bits (104), Expect = 8e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||| |||||||| | || ||||| ||||| ||||| ||||||||||| |||||| Sbjct 8429886 GGAATTCCGCCTGCTCCTCGTGGTGTTCCACAAATCGAAGTCACTTTTGATATCGATGCA 8429945 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACT 476209 || |||||||| ||||| | || |||||||| | | ||| ||| || || || Sbjct 8429946 AACGGTATTCTAAATGTCTCAGCACAGGATAAATCCACTGGGAAGCATAATAAGATTACA 8430005 Query 476210 ATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCC 476269 ||||| || || || | || | | || |||| || | ||||||| |||||| Sbjct 8430006 ATTACTAATGATAAAGGACGTTTGTCGAAGGATGAAATCGAAAGAATGGTTGCGGAAGCC 8430065 Query 476270 AAAGAGT 476276 || ||| Sbjct 8430066 GAAAAGT 8430072 Score = 95.1 bits (104), Expect = 8e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 474412 AGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACATCTTATTGGAGA 474471 |||||| ||||||||||||||||||| | ||||| || ||||||| |||||||| || Sbjct 8432923 AGGTAACCGAACAACACCATCATATGTGGCATTTACCGACACTGAACGCCTTATTGGTGA 8432982 Query 474472 TGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTG 474518 ||| || ||| |||| | |||| ||||| ||||||| |||||| Sbjct 8432983 TGCGGCCAAAAATCAGGTTGCAATGAATCCACATAATACTGTTTTTG 8433029 >seq2 Length=28345163 Score = 168 bits (186), Expect = 4e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 474659 CCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTT 474718 || ||| ||||||| | |||||| | | ||||||||| ||| ||| |||||||| Sbjct 17914923 CCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAATTGCGGAAGCATATCTT 17914982 Query 474719 GGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGT 474778 ||| ||||||| | ||||||| | || || || || || ||||||||| | |||||| Sbjct 17914983 GGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTTTAATGATGCACAACGT 17915042 Query 474779 CAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAA 474838 ||||| || |||||||| || | ||||| || || |||||| | ||||| || |||||| Sbjct 17915043 CAAGCCACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTCCGTATCATCAATGAA 17915102 Query 474839 CCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||| |||||||| | |||||||| || |||||||| Sbjct 17915103 CCAACTGCAGCCGCTATCGCTTATGGGCTGGATAAGAA 17915140 Score = 98.7 bits (108), Expect = 6e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| || || |||||||| || ||||| |||||||| ||||| |||||| | Sbjct 27366663 CCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTGCT 27366722 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||||| || || | | | | |||||| ||||| ||||| ||||| | Sbjct 27366723 TTAACATTTTCAATCGTGTCTGACGCCTCCA-CTTCAAGAGTAATCGTTTTTCCGGTCAA 27366781 Query 480752 AGTCTTAACGAAAATTTG 480769 ||||| ||||| ||||| Sbjct 27366782 TGTCTTTACGAAGATTTG 27366799 Score = 91.5 bits (100), Expect = 1e-12 Identities = 165/242 (68%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 474359 AGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAAT 474418 |||||||| | ||||| |||||||| ||| ||||| ||||||||||| ||||||||| Sbjct 17914527 AGTTGTGTTGGTGTTTATAAAAATGGTCGAGTGGAAATCATTGCCAATGAACAAGGTAAT 17914586 Query 474419 AGAACAACACCATCATATGTTTCTTTTAC------TGAAACTGAACATCTTATTGGAGAT 474472 || | || ||||| || || | ||||| || ||| | ||||||||| || Sbjct 17914587 AGGATCACGCCATCGTACGTAGCATTTACTGGTGATGGTGGTGAGCGTCTTATTGGCGAC 17914646 Query 474473 GCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTG 474532 || || ||| | || || | ||||| | || || | || |||| ||| | ||| Sbjct 17914647 GCAGCCAAAAACCAGTTAACAACAAATCCGGAAAACACAGTCTTCGATGTCAAACGCTTG 17914706 Query 474533 ATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAG 474592 ||||| || | | | ||| | ||||| ||| ||||| || |||||||| || Sbjct 17914707 ATTGGACGAGAGTACAAAGATTCGACTGTACAACAAGATATCAAACACTGGCCTTTCAAT 17914766 Query 474593 GT 474594 || Sbjct 17914767 GT 17914768 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 290843 GCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCT 290902 ||||| ||||||||||| || || | | |||| || || ||||| | | | |||| Sbjct 17915113 GCTGCAGTTGGTTCATTGATGATACGGACAACATTGAGGCCGGCAATAGTACCTGCATCT 17915054 Query 290903 AAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCtttttcc 290962 || || || ||||| ||||||||||| |||||||| ||||| | ||| || | || | Sbjct 17915053 TTGGTGGCTTGACGTTGTGCATCATTAAAGTAAGCAGGTACTGTGACAACTGCATGTTTC 17914994 Query 290963 actttctttttcaa-ataattttctgccatttgttttattt 291002 || ||||||| ||| ||| ||| || |||| ||| |||| Sbjct 17914993 AC-TTCTTTTCCAAGATATGCTTCCGCAATTTCTTTCATTT 17914954 >seq136 Length=9508 Score = 98.7 bits (108), Expect = 6e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| Sbjct 6187 CCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCC 6128 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| ||| || ||||||| | | | ||| | || || ||||| || || | Sbjct 6127 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTCAAC 6068 Query 480753 GTCTTAACGAAAATTTG 480769 | || || |||||||| Sbjct 6067 ATTTTTACAAAAATTTG 6051 >seq4 Length=16644688 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || |||||||| | || || ||||| ||||| || ||||| ||||| |||||||| | Sbjct 10332666 CCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCGCT 10332725 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||| ||||| | | | ||||| ||||| || ||||| || | | Sbjct 10332726 TTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTTAAA 10332785 Query 480753 GTCTTAACGAAAATTTG 480769 ||||| ||||||||||| Sbjct 10332786 GTCTTTACGAAAATTTG 10332802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268150288869752