Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq5 178 2e-39 seq2 152 7e-32 seq136 131 2e-25 seq4 127 3e-24 seq100 95.1 2e-14 >seq5 Length=16048563 Score = 178 bits (196), Expect = 2e-39 Identities = 192/252 (76%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 ||||||| | || |||| |||| || |||| ||||||||||| || ||||| ||| Sbjct 8433405 GTTGAATACAAGGGCGAGACGAAAACCTTCACTCCAGAAGAAATTTCATCAATGGTTTTG 8433464 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 |||| |||||||| || || ||| | || | ||| | | || || ||||| ||||| Sbjct 8433465 GTTAAAATGAAGGAAACGGCTGAAGCATTTCTTGGTCATGCAGTCAAGGATGCTGTTGTC 8433524 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || || || || |||| ||| ||||| ||||| || || || || ||| ||| || Sbjct 8433525 ACAGTCCCAGCATATTTCAATGACTCACAGCGACAAGCAACTAAAGATTCTGGTGCAATC 8433584 Query 195779 GCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 || |||||||| ||| || |||||||||||||||||||||| || || ||||| ||||| Sbjct 8433585 GCTGGTCTAAA-TGTCCTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGG 8433643 Query 195838 TCTGGACAAGAA 195849 | |||||||||| Sbjct 8433644 TTTGGACAAGAA 8433655 Score = 134 bits (148), Expect = 2e-26 Identities = 188/259 (73%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192 ||||||||||| ||||| || || || || || || |||| ||||| ||||| |||||| Sbjct 8434225 GAGATTGATTCTTTGTTCGAGGGGATCGATTTTTACACAAACATTACGCGTGCCCGTTTT 8434284 Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252 ||||| || |||||||||| | ||||| || ||||| ||| | | ||| Sbjct 8434285 GAAGAACTATGTGCTGATTTGTTCCGCTCAACCATGGATCCGGTTGAGAAAGCATTGCGT 8434344 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 ||||| ||||||||||| || | ||| |||| ||||| || || || |||||||| ||| Sbjct 8434345 GACGCCAAGATGGATAAAGCTCAAGTTCATGACATTGTACTAGTAGGTGGATCAACGCGT 8434404 Query 196313 ATTCCGAAGATTCAACAGATGCTT-TCT-AG-CTTCTTCAATAATAAAGATTTAAACAAA 196369 |||||||| | ||||| ||| ||| || |||||| | ||||| | || ||| Sbjct 8434405 ATTCCGAAAGT---ACAGAAACTTCTCTCAGATTTCTTCTCTGGCAAAGAACTGAATAAA 8434461 Query 196370 ACGATCAACCCGGATGAAG 196388 | || || || ||||||| Sbjct 8434462 AGTATTAATCCAGATGAAG 8434480 Score = 114 bits (126), Expect = 2e-20 Identities = 162/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 196388 GCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAA- 196446 || || || |||||||| || || || || |||||||| || |||| | | || || Sbjct 8434636 GCTGTGGCATATGGTGCAGCAGTACAAGCAGCTATTCTTTCTGGTGATAA--ATCGGAAG 8434693 Query 196447 -CGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGG 196505 ||| || || | || |||| || || ||||| | || || ||| |||||||||| | Sbjct 8434694 CCGTACAGGACTTGTTGTTACTCGACGTCGCACCACTTTCACTTGGTATTGAAACAGCTG 8434753 Query 196506 GTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAG 196565 | |||||||||||| ||||| | ||||||| ||||| || || || | | ||| Sbjct 8434754 GAGGTGTTATGACTGCTCTTATTAAGCGGAACACTACTATCCCAACGAAAACGTCTCAAA 8434813 Query 196566 TCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGT 196611 ||| | || || ||||||||||| || ||||||| |||||| || Sbjct 8434814 CATTTACCACATACTCCGATAATCAGCCTGGTGTTCTTATTCAGGT 8434859 Score = 105 bits (116), Expect = 9e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 ||||||||||| |||||||| ||||| || || |||||||| ||| || | | |||||| Sbjct 8428510 AATGTATTGATTTTTGATCTTGGTGGAGGCACTTTTGATGTGTCAATTTTAACTATTGAG 8428569 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGT 195976 | |||||| || |||||||| | || ||||| ||||||||||| || ||| Sbjct 8428570 GATGGTATTTTTGAAGTAAAATCAACCGCTGGAGATACTCATCTTGGAGGT 8428620 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 196388 GCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAAC 196447 || || ||||||||||| || || || || || ||| | ||||| | | | || Sbjct 8429496 GCTGTAGCTTATGGTGCTGCAGTGCAAGCAGCAATTTTATCAGGCGATAAATCAGATGCT 8429555 Query 196448 GTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGT 196507 || |||||||| |||||| | ||||||||||| |||| || ||| | ||||| || ||| Sbjct 8429556 GTACAAGATCTACTGCTATTAGATGTTGCACCATTATCACTAGGTATCGAAACTGCTGGT 8429615 Query 196508 GGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTC 196567 ||||| |||||| | || | || || ||||| ||||| || || | || Sbjct 8429616 GGTGTAATGACTGCGTTAATAAAAAGAAATACAACCATTCCAACAAAAACATCGCAGACA 8429675 Query 196568 TTTTCAACGTATTCCGATAATCAACCAGGTGT 196599 || | || |||||||||||||||||||| || Sbjct 8429676 TTCACTACCTATTCCGATAATCAACCAGGAGT 8429707 Score = 104 bits (114), Expect = 3e-17 Identities = 181/258 (70%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 196605 TTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTC 196663 |||| || |||||||| ||||| | | || | || || || |||| ||||| | ||| Sbjct 8434949 TTCAGGTTTATGAAGGTGAACG-TGCTATGACGAAAGACAATAATCTGCTTGGTAAATTC 8435007 Query 196664 GATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGAT 196723 || ||| | || ||||| |||| || | ||||| || || ||| | || |||||| Sbjct 8435008 GAATTGTCTGGAATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCACATTCGAT 8435067 Query 196724 ATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA 196783 || ||||| ||||| ||| | || || | || | || || | | || ||| | ||| Sbjct 8435068 ATTGACGCGAATGGTATTTTGAATGTTTCCGCACAAGATAAATCAACAGGAAAA-CAGAA 8435126 Query 196784 -AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGT 196842 |||||| |||||||||||||| || || | || ||||| || ||||| || ||||| Sbjct 8435127 CAAGATTACAATTACCAATGACAAAGGACGTTTGTCAAAGGATGAGATTGAGCGAATGGT 8435186 Query 196843 TCAAGATGCGGAAAAGTA 196860 || || || || || || Sbjct 8435187 ACAGGAAGCTGAGAAATA 8435204 Score = 102 bits (112), Expect = 1e-16 Identities = 176/256 (69%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 196131 TTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTT 196190 |||| |||||||| | || ||||| | |||||| || || | ||| ||||| || |||| Sbjct 8429129 TTGAAATTGATTCACTCTTCGACGGTACTGACTTTTACACTAGTATCACCCGAGCCCGTT 8429188 Query 196191 TTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTC 196250 |||||||| | |||||||||| | ||||| || ||||| ||| | | | Sbjct 8429189 TTGAAGAGCTTTGTGCTGATTTGTTCCGTTCAACCATGGATCCCGTTGAGAAAGCATTGC 8429248 Query 196251 GTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCC 196310 |||| || ||||||||||| || | | |||| ||||| | || || || || || | Sbjct 8429249 GTGATGCTAAGATGGATAAAGCTCAAATGCATGATATTGTTTTGGTTGGCGGTTCTACTC 8429308 Query 196311 GTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAA 196370 ||||||| || | ||| | |||| || ||||| | ||||| | ||||||| Sbjct 8429309 GTATTCCAAAAGTACAAAAATTGCTCTCCGATTTCTTTTCTGGAAAAGAACTGAACAAAA 8429368 Query 196371 CGATCAACCCGGATGA 196386 || || || ||||| Sbjct 8429369 GCATTAATCCAGATGA 8429384 Score = 96.9 bits (106), Expect = 5e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 196673 GGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCA 196732 || ||||| |||| || | ||||||||||| || | || || ||||| || ||| Sbjct 8429886 GGAATTCCGCCTGCTCCTCGTGGTGTTCCACAAATCGAAGTCACTTTTGATATCGATGCA 8429945 Query 196733 AATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTG 196792 || || |||||||| ||| |||| |||| || | |||| || | | |||||| Sbjct 8429946 AACGGTATTCTAAATGTCTCAGCACAGGATAAATCCACTGGGAAGCATAATAAGATTACA 8430005 Query 196793 ATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCG 196852 ||||| ||||| || || || | || ||||| ||||| ||| | |||||| || || Sbjct 8430006 ATTACTAATGATAAAGGACGTTTGTCGAAGGATGAAATCGAAAGAATGGTTGCGGAAGCC 8430065 Query 196853 GAAAAGTACAGGG 196865 |||||||||| || Sbjct 8430066 GAAAAGTACAAGG 8430078 Score = 96.9 bits (106), Expect = 5e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 ||||||||||| ||||||||||| || ||||| || | || | ||||| | ||||| Sbjct 8433783 ATCTTTGATCTTGGTGGTGGTACTTTCGATGTATCTATCCTAACCATTGAGGACGGTATT 8433842 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTG 195977 ||||||||||| |||| |||||||| |||||||| || |||| Sbjct 8433843 TTCGAAGTAAAATCTACGGCTGGTGACACTCATCTTGGAGGTG 8433885 >seq2 Length=28345163 Score = 152 bits (168), Expect = 7e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || || || ||||| ||||| || || | || || || | || Sbjct 27365627 ATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCG 27365568 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | |||||||| ||||| ||||| || ||||||||||| |||||| Sbjct 27365567 GATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCACCGGATCAG 27365508 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 |||||||| || ||||| || |||||| | || || || ||||| || | ||||| || Sbjct 27365507 CAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAAT 27365448 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||||| || || || || ||||| ||||| | ||||| || || Sbjct 27365447 ATTCAAAAAGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGG 27365401 Score = 149 bits (164), Expect = 8e-31 Identities = 174/234 (74%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 195616 GAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGAC 195675 ||| |||| || ||||| ||||||||||| | ||||| | ||| ||||| || | Sbjct 17914908 GAAAAAACC-TTCGCTCCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAAT 17914966 Query 195676 TGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTT 195735 ||||||| | | | || ||| |||||| |||||||||| || |||||||||||||| Sbjct 17914967 TGCGGAAGCATATCTTGGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTT 17915026 Query 195736 CAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCT 195795 | |||| ||||||| || || || || || || | | ||||||| || || || | | Sbjct 17915027 TAATGATGCACAACGTCAAGCCACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGT 17915086 Query 195796 TAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 | || |||||||||||||| || || || || |||||||| ||||| ||||| Sbjct 17915087 CCGTATCATCAATGAACCAACTGCAGCCGCTATCGCTTATGGGCTGGATAAGAA 17915140 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || || | || |||||||| || || || || || ||| ||||| Sbjct 27366802 ATGCAAATCTTCGTAAAGACATTGACCGGAAAAACGATTACTCTTGAAGTGGAGGCGTCA 27366743 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | ||||| ||||| |||||||||||||| ||||| || ||||| Sbjct 27366742 GACACGATTGAAAATGTTAAAGCAAAGATACAAGATAAGGAAGGTATTCCGCCGGATCAA 27366683 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || || ||||||||||||| Sbjct 27366682 CAGCGCCTGATTTTTGCTGGTA 27366661 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||||||||| ||||| ||||| || ||||| ||||| | || || || Sbjct 27365950 GTGGTATGCAAATCTTTGTAAAAACTCTTACCGGTAAAACGATCACATTGGAAGTGGAAG 27365891 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || || || ||||| || | ||||| || || || || || ||||| |||||||| | Sbjct 27365890 CATCTGATACCATCGAGAATGTTAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGG 27365831 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAAC 172006 | || || ||| | || || ||||||| || Sbjct 27365830 ACCAACAGCGATTGATCTTCGCTGGTATAC 27365801 >seq136 Length=9508 Score = 131 bits (144), Expect = 2e-25 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||| ||||| |||| | || || ||||| ||||| | || ||||| Sbjct 6043 GTGGTATGCAAATTTTTGTAAAAATGTTGACAGGCAAAACAATCACTTTAGAAGTTGAAG 6102 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || || |||||||| || | || |||||||||||||| || ||||| ||||| || | Sbjct 6103 CCTCTGATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAG 6162 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTA 172003 |||||||||| |||||||||||||||| Sbjct 6163 ATCAGCAACGTCTTATTTTTGCTGGTA 6189 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| |||||||| || || | || |||||||| |||| || || || || |||| Sbjct 4709 TATGCAGATCTTTGTAAAGACATTGACCGGAAAAACGATCATTCTTGAAGTGGAAGCGTC 4768 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 |||||| | || || | ||||| || || || |||||||| || ||||| || || || Sbjct 4769 AGACACGGTTGAGAATGTTAAAGCAAAAATCCAGGATAAGGAGGGTATTCCGCCGGAACA 4828 Query 171981 GCAACGACTTATTTTTGCTGGTA 172003 ||||| || |||||||||||| Sbjct 4829 ACAACGCCTAGTTTTTGCTGGTA 4851 >seq4 Length=16644688 Score = 127 bits (140), Expect = 3e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || |||||||| | ||||| || || || ||||| ||||| || ||||| Sbjct 3142701 ATGCAAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAATCGTCT 3142760 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || || || ||||| |||||||| ||||| ||||| || ||| Sbjct 3142761 GATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCTGACCAG 3142820 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||||||||||||||| ||||| Sbjct 3142821 CAACGACTTATTTTTGCAGGTAA 3142843 >seq100 Length=12629 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACT-GGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 |||||||||||| || ||| |||| || |||||||| || | || || || ||| ||| Sbjct 6961 TATGCAAATCTTCGT-AAAGACCTTGCTAGGAAAAACAATTATTCTTGAAGTGGAGGCGT 6903 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 ||||||| | || || | ||||| ||||| || || ||||| || ||| |||| ||| Sbjct 6902 CAGACACGGTTGAGAATGTTAAAGCAAAGATACAGGAAAAGGAGGGTATTTCACCGAATC 6843 Query 171980 AGCAACGACTTATTTTTGCTGGTA 172003 |||| || | |||| |||||||| Sbjct 6842 AGCAGCGCTTGATTTATGCTGGTA 6819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657856857509280