Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq2 127 4e-24
seq136 113 8e-20
seq100 95.1 2e-14
seq4 84.2 4e-11
>seq2
Length=28345163
Score = 127 bits (140), Expect = 4e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| ||||| || | || | ||||| ||||||||| || || | ||| | |
Sbjct 27365413 CGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCG 27365472
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || || |||||||||||||| |||| || || ||||| || || || || ||||||
Sbjct 27365473 TCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTTA 27365532
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || ||||||| ||||| ||| |||||||| || | || ||||| | |||||
Sbjct 27365533 TCCTGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATC 27365592
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| || || || || ||||| || || |||||
Sbjct 27365593 GTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627
Score = 100 bits (110), Expect = 5e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | ||||||||| || || || ||||| ||||||||||| || | |
Sbjct 27366663 CCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTGCT 27366722
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|| | |||| ||| || || || | ||| ||||| ||||| || ||||| || || |
Sbjct 27366723 TTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCAAT 27366782
Query 193341 GTTTTTACAAATATTTGCATTTT 193363
|| ||||| || |||||||| ||
Sbjct 27366783 GTCTTTACGAAGATTTGCATGTT 27366805
Score = 95.1 bits (104), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| || || || |||| |||||| || || || ||||||||||| || || ||||| | |
Sbjct 27365806 CCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 27365865
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|| | ||| || ||||| || | || ||||| | || || |||||||| || ||
Sbjct 27365866 TTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAAGA 27365925
Query 193341 GTTTTTACAAATATTTGCAT 193360
||||||||||| ||||||||
Sbjct 27365926 GTTTTTACAAAGATTTGCAT 27365945
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| || ||||| |||| ||| ||||| || || ||||| ||||| || || || || | |
Sbjct 27366326 CCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATTCCCTCTTTGTCCTGGATCTTCGCT 27366385
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|| | || || ||||| || | || ||||| | || || |||||||| || ||
Sbjct 27366386 TTAACGTTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 27366445
Query 193341 GTTTTTACAAATATTTGCAT 193360
||||||||||| ||||||||
Sbjct 27366446 GTTTTTACAAAAATTTGCAT 27366465
>seq136
Length=9508
Score = 113 bits (124), Expect = 8e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | || ||||| ||||| ||||||||||| ||||| || ||||
Sbjct 6187 CCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCC 6128
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|||| |||| || ||||| || | |||||||||| ||| || ||||| ||||| | |
Sbjct 6127 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTCAAC 6068
Query 193341 GTTTTTACAAATATTTGCAT 193360
|||||||||| ||||||||
Sbjct 6067 ATTTTTACAAAAATTTGCAT 6048
>seq100
Length=12629
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 193216 GTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTT 193275
|||| || ||||||| | | ||| ||||| | || ||||||||||| ||||| ||
Sbjct 6479 GTTTACCATCAAAAATAAGACACTGCTGATCTAGCGGAATTCCTTCTTTTTCTTGAATCC 6538
Query 193276 TGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTG 193335
|| |||| | || || ||||| |||| |||||||||| ||| || ||||| ||
Sbjct 6539 TGTCCTTTACAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCCT 6598
Query 193336 TTAGCGTTTTTACAAATATTTGCAT 193360
| | |||||||||||| ||||||||
Sbjct 6599 TCAACGTTTTTACAAAAATTTGCAT 6623
>seq4
Length=16644688
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277
|| || |||||||| | || || || ||||| || || || || ||||| || |||||
Sbjct 3142843 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 3142784
Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337
| || | ||| ||||||||| || || || || || || || || || || || ||
Sbjct 3142783 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 3142724
Query 193338 AGCGTTTTTACAAATATTTGCATTTT 193363
| ||||| || ||||||||||||||
Sbjct 3142723 AATGTTTTCACGAATATTTGCATTTT 3142698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899646820411680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |