Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4 102 1e-16 seq2 96.9 5e-15 >seq4 Length=16644688 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||||||||| | |||||||||||||| || || ||||| | || || ||| Sbjct 3142698 AAAATGCAAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAATCG 3142757 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| |||| || ||||| |||||| || ||||| || ||||| || || || Sbjct 3142758 TCTGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCTGAC 3142817 Query 155940 CAACAAAGATTGATTTATGCCGGTAA 155965 || ||| || | |||| ||| ||||| Sbjct 3142818 CAGCAACGACTTATTTTTGCAGGTAA 3142843 Score = 89.7 bits (98), Expect = 8e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || || ||||| || || ||||| | || |||||| || Sbjct 10332805 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAGACAATTACGCTTGAGGTCGAATCCTCG 10332746 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| || || || || |||||||||||||||||||| || Sbjct 10332745 GATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAGATCAG 10332686 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 || ||||||||| ||| |||| Sbjct 10332685 CAGCGATTGATTTTTGCAGGTA 10332664 >seq2 Length=28345163 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || ||| ||||||| ||||| || || || ||||| |||| || Sbjct 27365627 ATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCG 27365568 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| ||||| || |||||||| ||||| || || || || Sbjct 27365567 GATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCACCGGATCAG 27365508 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| || | || | |||||| || ||| | || || | || | || ||||||||| Sbjct 27365507 CAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAAT 27365448 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || ||||| |||||||||| Sbjct 27365447 ATTCAAAAAGAATCGACGCTTCA 27365425 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | || |||||||| |||||||| ||||| | ||||| || | Sbjct 27366805 AACATGCAAATCTTCGTAAAGACATTGACCGGAAAAACGATTACTCTTGAAGTGGAGGCG 27366746 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| ||| || ||| || ||||||||||| ||||| || || || || Sbjct 27366745 TCAGACACGATTGAAAATGTTAAAGCAAAGATACAAGATAAGGAAGGTATTCCGCCGGAT 27366686 Query 155940 CAACAAAGATTGATTTATGCCGGTA 155964 ||||| | |||||| ||| |||| Sbjct 27366685 CAACAGCGCCTGATTTTTGCTGGTA 27366661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731865833978400