Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq2 122 2e-22
seq4 105 1e-17
>seq2
Length=28345163
Score = 122 bits (134), Expect = 2e-22
Identities = 136/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
||||||||||| || | || || | || ||||| ||||| || |||||||||| ||
Sbjct 27365446 ATATTATAATCCGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGT 27365505
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| ||||| ||||| || || |||||||| || ||||| ||||||||| |||| |
Sbjct 27365506 TGCTGATCCGGTGGAATGCCCTCTTTATCCTGAATTTTGGCTTTTACATTCTCGATAGTA 27365565
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || | ||||||||| | || || ||||| ||||| | ||| || | || ||||||
Sbjct 27365566 TCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGC 27365625
Query 192535 AT 192536
||
Sbjct 27365626 AT 27365627
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451
|| ||||||| ||||| |||| |||||| || ||||| ||||||||||| || || ||||
Sbjct 27365801 GTATACCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTT 27365860
Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511
| ||| ||||| || | ||| || | ||| ||||| | || || |||||||| |
Sbjct 27365861 TCGCTTTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGG 27365920
Query 192512 TTAATGTTTTAATAAATATCTGCAT 192536
| | ||||| | ||| || |||||
Sbjct 27365921 TAAGAGTTTTTACAAAGATTTGCAT 27365945
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | ||||||||| || || || ||||| ||||||||||| ||
Sbjct 27366661 TACCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTG 27366720
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||| ||||| || | ||||||| || ||||| |||||||| ||||| || || |
Sbjct 27366721 CTTTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCA 27366780
Query 192515 ATGTTTTAATAAATATCTGCATTTT 192539
|||| || | || || ||||| ||
Sbjct 27366781 ATGTCTTTACGAAGATTTGCATGTT 27366805
>seq4
Length=16644688
Score = 105 bits (116), Expect = 1e-17
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||| ||||| || | || || || |||||||| || || || ||||| || ||||||
Sbjct 3142843 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 3142784
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
|| ||||| |||| ||| ||||||||||| || || ||||| || || |||||
Sbjct 3142783 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 3142724
Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539
|||||||| | ||||| ||||||||
Sbjct 3142723 AATGTTTTCACGAATATTTGCATTTT 3142698
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||| ||||| || |||| ||| ||||| || ||||| |||||||| || || || ||
Sbjct 10332664 TACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCG 10332723
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||||||||| || | ||| || ||||| || || || ||||| || ||||||||||
Sbjct 10332724 CTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTTA 10332783
Query 192515 ATGTTTTAATAAATATCTGCAT 192536
| || || | || || |||||
Sbjct 10332784 AAGTCTTTACGAAAATTTGCAT 10332805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984471498399900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |