Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2 122 2e-22 seq4 105 1e-17 >seq2 Length=28345163 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||||||||| || | || || | || ||||| ||||| || |||||||||| || Sbjct 27365446 ATATTATAATCCGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGT 27365505 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| ||||| || || |||||||| || ||||| ||||||||| |||| | Sbjct 27365506 TGCTGATCCGGTGGAATGCCCTCTTTATCCTGAATTTTGGCTTTTACATTCTCGATAGTA 27365565 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||||||||| | || || ||||| ||||| | ||| || | || |||||| Sbjct 27365566 TCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGC 27365625 Query 192535 AT 192536 || Sbjct 27365626 AT 27365627 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 || ||||||| ||||| |||| |||||| || ||||| ||||||||||| || || |||| Sbjct 27365801 GTATACCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTT 27365860 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 | ||| ||||| || | ||| || | ||| ||||| | || || |||||||| | Sbjct 27365861 TCGCTTTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGG 27365920 Query 192512 TTAATGTTTTAATAAATATCTGCAT 192536 | | ||||| | ||| || ||||| Sbjct 27365921 TAAGAGTTTTTACAAAGATTTGCAT 27365945 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | ||||||||| || || || ||||| ||||||||||| || Sbjct 27366661 TACCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTG 27366720 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||| ||||| || | ||||||| || ||||| |||||||| ||||| || || | Sbjct 27366721 CTTTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCA 27366780 Query 192515 ATGTTTTAATAAATATCTGCATTTT 192539 |||| || | || || ||||| || Sbjct 27366781 ATGTCTTTACGAAGATTTGCATGTT 27366805 >seq4 Length=16644688 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| ||||| || | || || || |||||||| || || || ||||| || |||||| Sbjct 3142843 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 3142784 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| |||| ||| ||||||||||| || || ||||| || || ||||| Sbjct 3142783 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 3142724 Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539 |||||||| | ||||| |||||||| Sbjct 3142723 AATGTTTTCACGAATATTTGCATTTT 3142698 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||| ||||| || |||| ||| ||||| || ||||| |||||||| || || || || Sbjct 10332664 TACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCG 10332723 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| || | ||| || ||||| || || || ||||| || |||||||||| Sbjct 10332724 CTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTTA 10332783 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | || || | || || ||||| Sbjct 10332784 AAGTCTTTACGAAAATTTGCAT 10332805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984471498399900