Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq4 123 5e-23
seq2 123 5e-23
>seq4
Length=16644688
Score = 123 bits (136), Expect = 5e-23
Identities = 115/146 (79%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||| |||||||| | || || ||||||||||| || || || ||||| || ||||||
Sbjct 3142843 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 3142784
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| |||||||| ||||||||||| || || ||||| || || |||||
Sbjct 3142783 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 3142724
Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072
|||||||| | |||||| ||||||||
Sbjct 3142723 AATGTTTTCACGAATATTTGCATTTT 3142698
Score = 104 bits (114), Expect = 4e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||| |||||||| |||| ||| || || || ||||| |||||||| || || || ||
Sbjct 10332664 TACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCG 10332723
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| || ||||| || ||||| || || || ||||| || ||||||||||
Sbjct 10332724 CTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTTA 10332783
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| || || | ||| || |||||
Sbjct 10332784 AAGTCTTTACGAAAATTTGCAT 10332805
>seq2
Length=28345163
Score = 123 bits (136), Expect = 5e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938
||||| |||||||||||| || | | || |||| ||||| ||||| || |||||
Sbjct 27365437 TCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAG 27365496
Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998
|||| || || || || ||||| || || |||||||| || ||||| |||||||||
Sbjct 27365497 ATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTTATCCTGAATTTTGGCTTTTACATTC 27365556
Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058
|||||||| || | ||||||||| | || || ||||| ||||| | ||| || | |
Sbjct 27365557 TCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACG 27365616
Query 172059 AATATCTGCAT 172069
|| ||||||||
Sbjct 27365617 AAAATCTGCAT 27365627
Score = 104 bits (114), Expect = 4e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | |||||| || || || || ||||| ||||||||||| ||
Sbjct 27366661 TACCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTG 27366720
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||| ||||| || || ||||||| || ||||| |||||||| ||||| || || |
Sbjct 27366721 CTTTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCA 27366780
Query 172048 ATGTTTTAATGAATATCTGCATTTT 172072
|||| || | ||| || ||||| ||
Sbjct 27366781 ATGTCTTTACGAAGATTTGCATGTT 27366805
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 171925 GTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTT 171984
|| ||||||| || || |||| ||||||||| ||||| ||||||||||| || || ||||
Sbjct 27365801 GTATACCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTT 27365860
Query 171985 TATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 172044
| ||| ||||| || ||||| || | ||| ||||| | || || |||||||| |
Sbjct 27365861 TCGCTTTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGG 27365920
Query 172045 TTAATGTTTTAATGAATATCTGCAT 172069
| | ||||| | || || |||||
Sbjct 27365921 TAAGAGTTTTTACAAAGATTTGCAT 27365945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905128374229200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |