Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4 123 5e-23 seq2 123 5e-23 >seq4 Length=16644688 Score = 123 bits (136), Expect = 5e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| |||||||| | || || ||||||||||| || || || ||||| || |||||| Sbjct 3142843 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 3142784 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || ||||| |||||||| ||||||||||| || || ||||| || || ||||| Sbjct 3142783 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 3142724 Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072 |||||||| | |||||| |||||||| Sbjct 3142723 AATGTTTTCACGAATATTTGCATTTT 3142698 Score = 104 bits (114), Expect = 4e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| |||| ||| || || || ||||| |||||||| || || || || Sbjct 10332664 TACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCG 10332723 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| || ||||| || ||||| || || || ||||| || |||||||||| Sbjct 10332724 CTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTTA 10332783 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 | || || | ||| || ||||| Sbjct 10332784 AAGTCTTTACGAAAATTTGCAT 10332805 >seq2 Length=28345163 Score = 123 bits (136), Expect = 5e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| |||||||||||| || | | || |||| ||||| ||||| || ||||| Sbjct 27365437 TCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAG 27365496 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 |||| || || || || ||||| || || |||||||| || ||||| ||||||||| Sbjct 27365497 ATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTTATCCTGAATTTTGGCTTTTACATTC 27365556 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 |||||||| || | ||||||||| | || || ||||| ||||| | ||| || | | Sbjct 27365557 TCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACG 27365616 Query 172059 AATATCTGCAT 172069 || |||||||| Sbjct 27365617 AAAATCTGCAT 27365627 Score = 104 bits (114), Expect = 4e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | |||||| || || || || ||||| ||||||||||| || Sbjct 27366661 TACCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTG 27366720 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || || ||||||| || ||||| |||||||| ||||| || || | Sbjct 27366721 CTTTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCA 27366780 Query 172048 ATGTTTTAATGAATATCTGCATTTT 172072 |||| || | ||| || ||||| || Sbjct 27366781 ATGTCTTTACGAAGATTTGCATGTT 27366805 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171925 GTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTT 171984 || ||||||| || || |||| ||||||||| ||||| ||||||||||| || || |||| Sbjct 27365801 GTATACCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTT 27365860 Query 171985 TATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 172044 | ||| ||||| || ||||| || | ||| ||||| | || || |||||||| | Sbjct 27365861 TCGCTTTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGG 27365920 Query 172045 TTAATGTTTTAATGAATATCTGCAT 172069 | | ||||| | || || ||||| Sbjct 27365921 TAAGAGTTTTTACAAAGATTTGCAT 27365945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905128374229200