Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 132 4e-26 seq136 100 3e-16 seq4 95.1 1e-14 >seq2 Length=28345163 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || ||||| || ||| | |||||||||||| | Sbjct 27365627 ATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCG 27365568 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | |||||| || || || || ||||| || || || || ||||| Sbjct 27365567 GATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCACCGGATCAG 27365508 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | ||||||||||| |||||| ||||||| | | |||| |||||||| Sbjct 27365507 CAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAAT 27365448 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||| |||||||| || ||| |||| | || | ||||| ||| Sbjct 27365447 ATTCAAAAAGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGGC 27365400 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| || ||||||||||| || || | ||||| ||||| | Sbjct 27365945 ATGCAAATCTTTGTAAAAACTCTTACCGGTAAAACGATCACATTGGAAGTGGAAGCATCT 27365886 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || || | |||| | ||| ||||| |||||||||||||| || || || || Sbjct 27365885 GATACCATCGAGAATGTTAAAGCGAAA-ATCCAGGACAAAGAAGGAATTCCACCGGACCA 27365827 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||| || |||||||| || || Sbjct 27365826 ACAGCGATTGATCTTCGCTGG 27365806 >seq136 Length=9508 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | |||| | | || || ||||| || || | ||||| |||||| | Sbjct 6048 ATGCAAATTTTTGTAAAAATGTTGACAGGCAAAACAATCACTTTAGAAGTTGAAGCCTCT 6107 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| ||||| ||||| ||||||||||||||||| ||||| ||||| Sbjct 6108 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 6167 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| | || ||||| || Sbjct 6168 CAACGTCTTATTTTTGCTGG 6187 >seq4 Length=16644688 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || |||| ||||| || |||||||| || || ||| || | Sbjct 10332805 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAGACAATTACGCTTGAGGTCGAATCCTCG 10332746 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| |||||| ||||| || ||||||||||| |||||||| ||||| Sbjct 10332745 GATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAGATCAG 10332686 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || ||||| ||||| || Sbjct 10332685 CAGCGATTGATTTTTGCAGG 10332666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893809612720