Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq2 123 4e-23
seq4 104 4e-17
>seq2
Length=28345163
Score = 123 bits (136), Expect = 4e-23
Identities = 145/196 (74%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| |||| ||| | || || ||||| || || | || |||||| |
Sbjct 27365626 TGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCGG 27365567
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
||||||| | ||||||||| ||||| || |||||| ||||||||||| ||||| |
Sbjct 27365566 ATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCACCGGATCAGC 27365507
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| |||| || ||||| || ||||| || || || | | ||| | | ||||||||||
Sbjct 27365506 AACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAATA 27365447
Query 146212 TACAAAAAGAATCGAC 146227
| ||||||||||||||
Sbjct 27365446 TTCAAAAAGAATCGAC 27365431
>seq4
Length=16644688
Score = 104 bits (114), Expect = 4e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||||||| | |||||||| || || || || ||||| |||| |||||| |
Sbjct 3142702 TGCAAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAATCGTCTG 3142761
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| | ||||| || |||||| || ||| || ||||| ||||| || || |
Sbjct 3142762 ATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCTGACCAGC 3142821
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
|| |||| ||||||||||||||
Sbjct 3142822 AACGACTTATTTTTGCAGGTAA 3142843
Score = 93.3 bits (102), Expect = 7e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| |||| || ||||| || || |||||||| |||| || ||| |
Sbjct 10332804 TGCAAATTTTCGTAAAGACTTTAACTGGTAAGACAATTACGCTTGAGGTCGAATCCTCGG 10332745
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| ||||||||||| || || || ||||||||||| || || ||||| |
Sbjct 10332744 ATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAGATCAGC 10332685
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
| || | |||||||||||||
Sbjct 10332684 AGCGATTGATTTTTGCAGGTA 10332664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786159776548080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |