Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq2 123 4e-23 seq4 104 4e-17 >seq2 Length=28345163 Score = 123 bits (136), Expect = 4e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| |||| ||| | || || ||||| || || | || |||||| | Sbjct 27365626 TGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCGG 27365567 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| | ||||||||| ||||| || |||||| ||||||||||| ||||| | Sbjct 27365566 ATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCACCGGATCAGC 27365507 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || |||| || ||||| || ||||| || || || | | ||| | | |||||||||| Sbjct 27365506 AACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAATA 27365447 Query 146212 TACAAAAAGAATCGAC 146227 | |||||||||||||| Sbjct 27365446 TTCAAAAAGAATCGAC 27365431 >seq4 Length=16644688 Score = 104 bits (114), Expect = 4e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | |||||||| || || || || ||||| |||| |||||| | Sbjct 3142702 TGCAAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAATCGTCTG 3142761 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || |||||| || ||| || ||||| ||||| || || | Sbjct 3142762 ATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCTGACCAGC 3142821 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || |||| |||||||||||||| Sbjct 3142822 AACGACTTATTTTTGCAGGTAA 3142843 Score = 93.3 bits (102), Expect = 7e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| || ||||| || || |||||||| |||| || ||| | Sbjct 10332804 TGCAAATTTTCGTAAAGACTTTAACTGGTAAGACAATTACGCTTGAGGTCGAATCCTCGG 10332745 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||||||| || || || ||||||||||| || || ||||| | Sbjct 10332744 ATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAGATCAGC 10332685 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | || | ||||||||||||| Sbjct 10332684 AGCGATTGATTTTTGCAGGTA 10332664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786159776548080