Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2 145 6e-30 seq136 93.3 3e-14 >seq2 Length=28345163 Score = 145 bits (160), Expect = 6e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||| |||||||| |||||||||||||| |||||||||| | || ||| Sbjct 27365412 ACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACC 27365471 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | ||||| || ||| | || | || |||||||||||| ||||| |||||||| Sbjct 27365472 GTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTT 27365531 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || |||||| | ||| ||| | || | ||| || || ||||||||| | |||| Sbjct 27365532 ATCCTG-AATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTA 27365590 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||||||||| | || || || || |||||||| Sbjct 27365591 TCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| | |||| | || ||||||||||||||||| || || ||||||| ||| | Sbjct 27366663 CCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTGCT 27366722 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| |||| | ||||| || || ||||||||||| || ||||| || || || Sbjct 27366723 TTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCAAT 27366782 Query 29767 GTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || Sbjct 27366783 GTCTTTACGAAGATTTGCATGTT 27366805 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 ||||| | ||||||| ||||||||||| ||||| ||||||||||| || | || | Sbjct 27366326 CCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATTCCCTCTTTGTCCTGGATCTTCGCT 27366385 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || || | || | || ||||| ||| ||||| | || || ||||| ||||| | Sbjct 27366386 TTAACGTTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 27366445 Query 29767 GTTTTAACAAATATCTGCAT 29786 ||||| ||||| || ||||| Sbjct 27366446 GTTTTTACAAAAATTTGCAT 27366465 >seq136 Length=9508 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 29664 TTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGT 29723 ||| || ||||||||||||||||| || || || | |||| ||| ||| | || || || Sbjct 4832 TTGTTGTTCCGGCGGAATACCCTCCTTATCCTGGATTTTTGCTTTAACATTCTCAACCGT 4773 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||| || ||| ||||||||| | || ||||| || || || || || ||||| ||||| Sbjct 4772 GTCTGACGCTTCCACTTCAAGAATGATCGTTTTTCCGGTCAATGTCTTTACAAAGATCTG 4713 Query 29784 CATTTT 29789 ||| || Sbjct 4712 CATATT 4707 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 |||||| | || | | ||||||||| || ||||| || ||||||||||| ||| || | Sbjct 6187 CCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTG-AATCTTGGC 6129 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 || ||| |||| | || ||||| ||| ||||| | ||| || |||||||| || || Sbjct 6128 CTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTCAA 6069 Query 29766 GGTTTTAACAAATATCTGCAT 29786 |||| ||||| || ||||| Sbjct 6068 CATTTTTACAAAAATTTGCAT 6048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216035665034