Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq2 145 6e-30
seq136 93.3 3e-14
>seq2
Length=28345163
Score = 145 bits (160), Expect = 6e-30
Identities = 164/217 (76%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || |||| |||||||| |||||||||||||| |||||||||| | || |||
Sbjct 27365412 ACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACC 27365471
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| || | ||||| || ||| | || | || |||||||||||| ||||| ||||||||
Sbjct 27365472 GTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTT 27365531
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|| || |||||| | ||| ||| | || | ||| || || ||||||||| | ||||
Sbjct 27365532 ATCCTG-AATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTA 27365590
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| ||||||||||| | || || || || ||||||||
Sbjct 27365591 TCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| | |||| | || ||||||||||||||||| || || ||||||| ||| |
Sbjct 27366663 CCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTGCT 27366722
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| ||| |||| | ||||| || || ||||||||||| || ||||| || || ||
Sbjct 27366723 TTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCAAT 27366782
Query 29767 GTTTTAACAAATATCTGCATTTT 29789
|| || || || || ||||| ||
Sbjct 27366783 GTCTTTACGAAGATTTGCATGTT 27366805
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
||||| | ||||||| ||||||||||| ||||| ||||||||||| || | || |
Sbjct 27366326 CCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATTCCCTCTTTGTCCTGGATCTTCGCT 27366385
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| || | || | || ||||| ||| ||||| | || || ||||| ||||| |
Sbjct 27366386 TTAACGTTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 27366445
Query 29767 GTTTTAACAAATATCTGCAT 29786
||||| ||||| || |||||
Sbjct 27366446 GTTTTTACAAAAATTTGCAT 27366465
>seq136
Length=9508
Score = 93.3 bits (102), Expect = 3e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 29664 TTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGT 29723
||| || ||||||||||||||||| || || || | |||| ||| ||| | || || ||
Sbjct 4832 TTGTTGTTCCGGCGGAATACCCTCCTTATCCTGGATTTTTGCTTTAACATTCTCAACCGT 4773
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
||| || ||| ||||||||| | || ||||| || || || || || ||||| |||||
Sbjct 4772 GTCTGACGCTTCCACTTCAAGAATGATCGTTTTTCCGGTCAATGTCTTTACAAAGATCTG 4713
Query 29784 CATTTT 29789
||| ||
Sbjct 4712 CATATT 4707
Score = 86.0 bits (94), Expect = 5e-12
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705
|||||| | || | | ||||||||| || ||||| || ||||||||||| ||| || |
Sbjct 6187 CCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTG-AATCTTGGC 6129
Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765
|| ||| |||| | || ||||| ||| ||||| | ||| || |||||||| || ||
Sbjct 6128 CTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTCAA 6069
Query 29766 GGTTTTAACAAATATCTGCAT 29786
|||| ||||| || |||||
Sbjct 6068 CATTTTTACAAAAATTTGCAT 6048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385216035665034
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |