Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq5 178 1e-38
seq2 165 6e-35
>seq5
Length=16048563
Score = 178 bits (196), Expect = 1e-38
Identities = 263/370 (71%), Gaps = 7/370 (2%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| || || | |||||| |||| ||| || || ||||||||||| ||||||| || |||
Sbjct 8433655 TTCTTGTCCAAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAGGACA 8433596
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| |||||||| ||| || | ||||||||| ||||||| ||||| || || ||||||
Sbjct 8433595 TTTAGACCAGCGATTGCACCAGAATCTTTAGTTGCTTGTCGCTGTGAGTCATTGAAATAT 8433536
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511
|| || || || | ||| ||||| | ||| | | |||| | | || || ||||
Sbjct 8433535 GCTGGGACTGTGACAACAGCATCCTTGACTGCATGACCAAGAAATGCTTCAGCCGTTTCC 8433476
Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA--GAATATTGCTTGGATTCAT 282569
||||||||| |||| |||||||||||||| ||||||| ||| || || | ||
Sbjct 8433475 TTCATTTTAACCAAAACCATTGATGAAATTTCTTCTGGAGTGAAGGTT--TTCGTCTCGC 8433418
Query 282570 TTTGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCC 282626
| ||| || | | | |||||| | |||| |||| | ||||| |||||||
Sbjct 8433417 CCTTGTATTCAACCTGCACTTTTGGTTTACCACCACCAGCATTCACGACTTTGAATGGCC 8433358
Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686
| | |||||||||||| || || | |||| ||| | | |||||| |||||||| |
Sbjct 8433357 AGTGTTTCATATCTGACTGTACTGATCCATCATCAAATTTACGACCAATCAATCGTTTCG 8433298
Query 282687 CATCAAAAAT 282696
|||| ||||
Sbjct 8433297 CATCTGAAAT 8433288
Score = 118 bits (130), Expect = 8e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|||||||| |||||||| |||| ||||||||||||||| || || || |||| | |||
Sbjct 8428338 TTTTTATCTAGACCATATGCAATAGCAGCAGCAGTTGGCTCGTTGATGATTCGAAGGACA 8428279
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| || |||| ||| || |||||||| || ||||||| ||| ||||| || |||||
Sbjct 8428278 TTCAGGCCAGAAATGGCACCCGCATCTTTGGTTGCTTGTCGTTGAGAATCATTGAAATAC 8428219
Query 282452 GCAGGAACAGTAATAACGGCATC 282474
|| || ||||| | ||||||||
Sbjct 8428218 GCTGGTACAGTTACTACGGCATC 8428196
Score = 116 bits (128), Expect = 3e-20
Identities = 179/253 (71%), Gaps = 2/253 (1%)
Strand=Plus/Minus
Query 281793 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 281852
||||||| ||||||| | ||| ||| |||| ||| ||| ||| |||| ||| |||||||
Sbjct 8434480 CTTCATCTGGATTAATACTTTTATTCAGTTCTTTGCCAGAGAAGAAATCTGAGAGAAGTT 8434421
Query 281853 GTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 281911
||| ||| || |||||||| | |||||| || |||| |||||| ||||| || || | |
Sbjct 8434420 -TCTGTACTTTCGGAATACGCGTTGATCCACCTACTAGTACAATGTCATGAACTTGAGCT 8434362
Query 281912 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAG 281971
||||||| || | || || |||| ||||| || || | | | |||||
Sbjct 8434361 TTATCCATCTTGGCGTCACGCAATGCTTTCTCAACCGGATCCATGGTTGAGCGGAACAAA 8434302
Query 281972 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 282031
|| | ||| |||||||| || || | |||| | | | |||| || || |||
Sbjct 8434301 TCAGCACATAGTTCTTCAAAACGGGCACGCGTAATGTTTGTGTAAAAATCGATCCCCTCG 8434242
Query 282032 AACAAAGAATCAA 282044
|||||||||||||
Sbjct 8434241 AACAAAGAATCAA 8434229
Score = 105 bits (116), Expect = 5e-17
Identities = 102/131 (78%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175
||||| || |||| ||| ||||| ||||||||||| || ||| || |||| || |||
Sbjct 8433646 AAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAGGACATTTAGACCA 8433587
Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235
|| ||| | ||||||| ||||||||||| ||||| |||||| ||||||||||| ||
Sbjct 8433586 GCGATTGCACCAGAATCTTTAGTTGCTTGTCGCTGTGAGTCATTGAAATATGCTGGGACT 8433527
Query 86236 GTAATAACTGC 86246
|| | ||| ||
Sbjct 8433526 GTGACAACAGC 8433516
Score = 95.1 bits (104), Expect = 9e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749
|||||| |||||| |||||| | |||| | |||| |||||| ||||| ||||| ||
Sbjct 8433029 CAAAAACAGTATTATGTGGATTCATTGCAACCTGATTTTTGGCCGCATCACCAATAAGGC 8432970
Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796
|||| || || ||||||| ||||||||||| ||||| || ||||||
Sbjct 8432969 GTTCAGTGTCGGTAAATGCCACATATGATGGTGTTGTTCGGTTACCT 8432923
Score = 95.1 bits (104), Expect = 9e-14
Identities = 156/225 (69%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 281341 CATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTT 281400
||||| |||||| | ||| | || || | ||| | ||| ||||| ||||| || ||
Sbjct 8435184 CATTCGCTCAATCTCATCCTTTGACAAACGTCCTTTGTCATTGGTAATTGTAATCTTGTT 8435125
Query 281401 GGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATC 281460
||| |||||||||||| || | ||||| | ||||||||| || || | |||
Sbjct 8435124 CTGTTTTCCTGTTGATTTATCTTGTGCGGAAACATTCAAAATACCATTCGCGTCAATATC 8435065
Query 281461 AAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAA 281520
||||||||||||||||| || || || | ||||||| || || || ||| | ||
Sbjct 8435064 GAATGTGACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAATTCGAA 8435005
Query 281521 TGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTC 281565
| | || || |||||| ||||| || | |||||||| ||
Sbjct 8435004 TTTACCAAGCAGATTATTGTCTTTCGTCATAGCACGTTCACCTTC 8434960
>seq2
Length=28345163
Score = 165 bits (182), Expect = 6e-35
Identities = 174/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382
||| ||| || ||||| || ||||| || | ||| || |||||||||||||| || ||
Sbjct 17915149 TTGCCTTCCTTCTTATCCAGCCCATAAGCGATAGCGGCTGCAGTTGGTTCATTGATGATA 17915090
Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442
| | |||||| || || ||||| | ||||||||||| |||||||| | ||||| |||
Sbjct 17915089 CGGACAACATTGAGGCCGGCAATAGTACCTGCATCTTTGGTGGCTTGACGTTGTGCATCA 17915030
Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502
||||| || ||||| || || | ||| |||| | | ||||||||||||| ||| ||
Sbjct 17915029 TTAAAGTAAGCAGGTACTGTGACAACTGCATGTTTCACTTCTTTTCCAAGATATGCTTCC 17914970
Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551
|| ||| ||||||||||| | || ||| | |||||||| ||| ||||
Sbjct 17914969 GCAATTTCTTTCATTTTACCGAGAACCATCGCTGAAATTTCTTCAGGAG 17914921
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740597309448324
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |