Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq5 178 1e-38 seq2 165 6e-35 >seq5 Length=16048563 Score = 178 bits (196), Expect = 1e-38 Identities = 263/370 (71%), Gaps = 7/370 (2%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || | |||||| |||| ||| || || ||||||||||| ||||||| || ||| Sbjct 8433655 TTCTTGTCCAAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAGGACA 8433596 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || |||||||| ||| || | ||||||||| ||||||| ||||| || || |||||| Sbjct 8433595 TTTAGACCAGCGATTGCACCAGAATCTTTAGTTGCTTGTCGCTGTGAGTCATTGAAATAT 8433536 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || || || | ||| ||||| | ||| | | |||| | | || || |||| Sbjct 8433535 GCTGGGACTGTGACAACAGCATCCTTGACTGCATGACCAAGAAATGCTTCAGCCGTTTCC 8433476 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA--GAATATTGCTTGGATTCAT 282569 ||||||||| |||| |||||||||||||| ||||||| ||| || || | || Sbjct 8433475 TTCATTTTAACCAAAACCATTGATGAAATTTCTTCTGGAGTGAAGGTT--TTCGTCTCGC 8433418 Query 282570 TTTGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCC 282626 | ||| || | | | |||||| | |||| |||| | ||||| ||||||| Sbjct 8433417 CCTTGTATTCAACCTGCACTTTTGGTTTACCACCACCAGCATTCACGACTTTGAATGGCC 8433358 Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686 | | |||||||||||| || || | |||| ||| | | |||||| |||||||| | Sbjct 8433357 AGTGTTTCATATCTGACTGTACTGATCCATCATCAAATTTACGACCAATCAATCGTTTCG 8433298 Query 282687 CATCAAAAAT 282696 |||| |||| Sbjct 8433297 CATCTGAAAT 8433288 Score = 118 bits (130), Expect = 8e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| |||||||| |||| ||||||||||||||| || || || |||| | ||| Sbjct 8428338 TTTTTATCTAGACCATATGCAATAGCAGCAGCAGTTGGCTCGTTGATGATTCGAAGGACA 8428279 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| ||| || |||||||| || ||||||| ||| ||||| || ||||| Sbjct 8428278 TTCAGGCCAGAAATGGCACCCGCATCTTTGGTTGCTTGTCGTTGAGAATCATTGAAATAC 8428219 Query 282452 GCAGGAACAGTAATAACGGCATC 282474 || || ||||| | |||||||| Sbjct 8428218 GCTGGTACAGTTACTACGGCATC 8428196 Score = 116 bits (128), Expect = 3e-20 Identities = 179/253 (71%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 281793 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 281852 ||||||| ||||||| | ||| ||| |||| ||| ||| ||| |||| ||| ||||||| Sbjct 8434480 CTTCATCTGGATTAATACTTTTATTCAGTTCTTTGCCAGAGAAGAAATCTGAGAGAAGTT 8434421 Query 281853 GTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 281911 ||| ||| || |||||||| | |||||| || |||| |||||| ||||| || || | | Sbjct 8434420 -TCTGTACTTTCGGAATACGCGTTGATCCACCTACTAGTACAATGTCATGAACTTGAGCT 8434362 Query 281912 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAG 281971 ||||||| || | || || |||| ||||| || || | | | ||||| Sbjct 8434361 TTATCCATCTTGGCGTCACGCAATGCTTTCTCAACCGGATCCATGGTTGAGCGGAACAAA 8434302 Query 281972 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 282031 || | ||| |||||||| || || | |||| | | | |||| || || ||| Sbjct 8434301 TCAGCACATAGTTCTTCAAAACGGGCACGCGTAATGTTTGTGTAAAAATCGATCCCCTCG 8434242 Query 282032 AACAAAGAATCAA 282044 ||||||||||||| Sbjct 8434241 AACAAAGAATCAA 8434229 Score = 105 bits (116), Expect = 5e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175 ||||| || |||| ||| ||||| ||||||||||| || ||| || |||| || ||| Sbjct 8433646 AAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAGGACATTTAGACCA 8433587 Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235 || ||| | ||||||| ||||||||||| ||||| |||||| ||||||||||| || Sbjct 8433586 GCGATTGCACCAGAATCTTTAGTTGCTTGTCGCTGTGAGTCATTGAAATATGCTGGGACT 8433527 Query 86236 GTAATAACTGC 86246 || | ||| || Sbjct 8433526 GTGACAACAGC 8433516 Score = 95.1 bits (104), Expect = 9e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| |||||| |||||| | |||| | |||| |||||| ||||| ||||| || Sbjct 8433029 CAAAAACAGTATTATGTGGATTCATTGCAACCTGATTTTTGGCCGCATCACCAATAAGGC 8432970 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 |||| || || ||||||| ||||||||||| ||||| || |||||| Sbjct 8432969 GTTCAGTGTCGGTAAATGCCACATATGATGGTGTTGTTCGGTTACCT 8432923 Score = 95.1 bits (104), Expect = 9e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 281341 CATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTT 281400 ||||| |||||| | ||| | || || | ||| | ||| ||||| ||||| || || Sbjct 8435184 CATTCGCTCAATCTCATCCTTTGACAAACGTCCTTTGTCATTGGTAATTGTAATCTTGTT 8435125 Query 281401 GGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATC 281460 ||| |||||||||||| || | ||||| | ||||||||| || || | ||| Sbjct 8435124 CTGTTTTCCTGTTGATTTATCTTGTGCGGAAACATTCAAAATACCATTCGCGTCAATATC 8435065 Query 281461 AAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAA 281520 ||||||||||||||||| || || || | ||||||| || || || ||| | || Sbjct 8435064 GAATGTGACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAATTCGAA 8435005 Query 281521 TGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTC 281565 | | || || |||||| ||||| || | |||||||| || Sbjct 8435004 TTTACCAAGCAGATTATTGTCTTTCGTCATAGCACGTTCACCTTC 8434960 >seq2 Length=28345163 Score = 165 bits (182), Expect = 6e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 ||| ||| || ||||| || ||||| || | ||| || |||||||||||||| || || Sbjct 17915149 TTGCCTTCCTTCTTATCCAGCCCATAAGCGATAGCGGCTGCAGTTGGTTCATTGATGATA 17915090 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | | |||||| || || ||||| | ||||||||||| |||||||| | ||||| ||| Sbjct 17915089 CGGACAACATTGAGGCCGGCAATAGTACCTGCATCTTTGGTGGCTTGACGTTGTGCATCA 17915030 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 ||||| || ||||| || || | ||| |||| | | ||||||||||||| ||| || Sbjct 17915029 TTAAAGTAAGCAGGTACTGTGACAACTGCATGTTTCACTTCTTTTCCAAGATATGCTTCC 17914970 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551 || ||| ||||||||||| | || ||| | |||||||| ||| |||| Sbjct 17914969 GCAATTTCTTTCATTTTACCGAGAACCATCGCTGAAATTTCTTCAGGAG 17914921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740597309448324