Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq2 111 2e-19
seq136 96.9 3e-15
seq4 95.1 1e-14
>seq2
Length=28345163
Score = 111 bits (122), Expect = 2e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 137181 ATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC 137240
|| ||| || || | ||| | ||| | |||| || ||||||||||| || || |||||
Sbjct 27365397 ATAGCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATC 27365456
Query 137241 GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 137300
|| || | ||| || | ||||| || ||| |||| || ||||||||||| ||
Sbjct 27365457 CGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGG 27365516
Query 137301 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTC 137360
|| ||||| ||||| || |||||| ||||| | || | || || | || |||
Sbjct 27365517 TGGAATGCCCTCTTTATCCTGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTC 27365576
Query 137361 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|||||| | || | ||| ||||| |||| ||| |||||||| || |||||
Sbjct 27365577 TACTTCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627
Score = 96.9 bits (106), Expect = 3e-15
Identities = 110/144 (76%), Gaps = 4/144 (3%)
Strand=Plus/Plus
Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG-GTAATTTTT 137328
|||||||| | ||||| || || ||||| || || || ||||| || || ||| | ||
Sbjct 27366661 TACCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTA--TCTT 27366718
Query 137329 TGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 137387
|| |||| | | ||| | |||||||| | || ||||||| ||| | ||| || |||||
Sbjct 27366719 TGCTTTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGT 27366778
Query 137388 CAATGTTTTTACGAATATTTGCAT 137411
|||||| |||||||| ||||||||
Sbjct 27366779 CAATGTCTTTACGAAGATTTGCAT 27366802
>seq136
Length=9508
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329
|||||||| | || |||||||||||||| ||||| || ||||||||||| ||| ||
Sbjct 6189 TACCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGG 6130
Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389
|||| | ||| | || || | || ||| ||||| | ||| | || ||||| ||||
Sbjct 6129 CCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTCA 6070
Query 137390 ATGTTTTTACGAATATTTGCATA 137412
| ||||||| || |||||||||
Sbjct 6069 ACATTTTTACAAAAATTTGCATA 6047
>seq4
Length=16644688
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329
|||| ||| | |||| || |||||||| |||||||||||||||||||| ||| ||
Sbjct 10332664 TACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCG 10332723
Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389
||||| | ||| | ||| || | || ||| || |||| || | ||||| || || |
Sbjct 10332724 CTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTTA 10332783
Query 137390 ATGTTTTTACGAATATTTGCAT 137411
| || |||||||| ||||||||
Sbjct 10332784 AAGTCTTTACGAAAATTTGCAT 10332805
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328
||||| ||| | || || |||||||| || || || ||||| || || || ||||||
Sbjct 3142843 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 3142784
Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388
|| | | || | || || | | |||||| |||| || | ||||||||| |||
Sbjct 3142783 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 3142724
Query 137389 AATGTTTTTACGAATATTTGCAT 137411
|||||||| ||||||||||||||
Sbjct 3142723 AATGTTTTCACGAATATTTGCAT 3142701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488539884016800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |