Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq2 187 5e-42
seq136 140 6e-28
seq4 116 7e-21
>seq2
Length=28345163
Score = 187 bits (206), Expect = 5e-42
Identities = 171/216 (79%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| ||||| | ||| || || |||||||| || ||||||||||| || || | | |||
Sbjct 27365412 ACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACC 27365471
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||| || | |||||||| ||||||||||||| ||| ||||| || || || || || ||
Sbjct 27365472 GTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTT 27365531
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||| ||||| || ||||||||||| || || ||||| | |||||||||||| |||||
Sbjct 27365532 ATCCTGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTAT 27365591
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||| ||||| |||| |||||||| || ||||||||
Sbjct 27365592 CGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627
Score = 122 bits (134), Expect = 2e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | |||||||| || || || |||||||||||||| |||||||||
Sbjct 27366663 CCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTGCT 27366722
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| |||||||||||||| || | || ||||| | ||| ||||| || || |||||
Sbjct 27366723 TTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCAAT 27366782
Query 82791 GTCTTTACAAATATCTGCAT 82810
|||||||| || || |||||
Sbjct 27366783 GTCTTTACGAAGATTTGCAT 27366802
>seq136
Length=9508
Score = 140 bits (154), Expect = 6e-28
Identities = 115/140 (82%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| ||||||||||| |||||||| || ||||||||||| ||
Sbjct 6187 CCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCC 6128
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
||||||||||| || |||||| | ||| ||||| ||||| || || ||||||||||||
Sbjct 6127 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTGCCTGTCAAC 6068
Query 82791 GTCTTTACAAATATCTGCAT 82810
| |||||||| || |||||
Sbjct 6067 ATTTTTACAAAAATTTGCAT 6048
Score = 109 bits (120), Expect = 1e-18
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| | ||| | |||||| || || || || || |||||||| || || ||||||
Sbjct 4849 CCAGCAAAAACTAGGCGTTGTTGTTCCGGCGGAATACCCTCCTTATCCTGGATTTTTGCT 4790
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||| |||| ||| || | ||| ||||| | | | ||||| || || |||||
Sbjct 4789 TTAACATTCTCAACCGTGTCTGACGCTTCCACTTCAAGAATGATCGTTTTTCCGGTCAAT 4730
Query 82791 GTCTTTACAAATATCTGCAT 82810
||||||||||| ||||||||
Sbjct 4729 GTCTTTACAAAGATCTGCAT 4710
>seq4
Length=16644688
Score = 116 bits (128), Expect = 7e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|| ||||| || | || || |||||||||||||| ||||| || || |||||||| |||
Sbjct 10332666 CCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCGCT 10332725
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||||||||||||||| | ||| || || | || || ||||| || || ||
Sbjct 10332726 TTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTTAAA 10332785
Query 82791 GTCTTTACAAATATCTGCATTATT 82814
|||||||| || || ||||| |||
Sbjct 10332786 GTCTTTACGAAAATTTGCATGATT 10332809
Score = 107 bits (118), Expect = 4e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || ||||| || |||| ||| || || || || || || |||||||| ||||| ||
Sbjct 3142843 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 3142784
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| || ||||| ||||| |||||| | |||||| || | || ||||||||||| |||
Sbjct 3142783 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 3142724
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
|| || || || ||||| ||||||
Sbjct 3142723 AATGTTTTCACGAATATTTGCATT 3142700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981818721308486
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |