Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq3 100 4e-16
seq2 86.0 9e-12
>seq3
Length=25485961
Score = 100 bits (110), Expect = 4e-16
Identities = 102/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140
||| ||||| ||||| || | || ||||| ||||| || || || | ||||||||||||
Sbjct 17642577 AAGGATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 17642636
Query 69141 TGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200
|| | ||| ||||| || | ||||||||||| ||| ||||||||||| | |||||
Sbjct 17642637 AGATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCT 17642696
Query 69201 GACTACTACTTTA 69213
|| | |||||||
Sbjct 17642697 AACCATTACTTTA 17642709
>seq2
Length=28345163
Score = 86.0 bits (94), Expect = 9e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140
||| ||||| | ||| || | || ||||| ||||| || || || | ||||||||||||
Sbjct 24879746 AAGGATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 24879687
Query 69141 TGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200
|| | ||| | ||| || | ||||||||||| ||| ||||||||||| | ||||
Sbjct 24879686 AGATCGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTT 24879627
Query 69201 GACTACTACTTT 69212
|| ||||| ||
Sbjct 24879626 AACCACTACCTT 24879615
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686903012793360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |