Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq4 129 7e-25
seq2 125 8e-24
seq136 113 5e-20
>seq4
Length=16644688
Score = 129 bits (142), Expect = 7e-25
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || || || | || |||||||| ||||| |||||||| || ||
Sbjct 3142700 AATGCAAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAATCGTC 3142759
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| |||| ||| ||||||||||||||||||| |||||||| || || || |||||
Sbjct 3142760 TGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCTGACCA 3142819
Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548
||| || || |||||||| |||||
Sbjct 3142820 GCAACGACTTATTTTTGCAGGTAA 3142843
Score = 109 bits (120), Expect = 6e-19
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| |||||||| || || ||||| | || || ||||| ||||| |||||||| || ||
Sbjct 10332808 ATCATGCAAATTTTCGTAAAGACTTTAACTGGTAAGACAATTACGCTTGAGGTCGAATCC 10332749
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|||| |||| |||| | || || || ||||||||||| || || || ||||||||
Sbjct 10332748 TCGGATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAGAT 10332689
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTA 27547
|||||||| | |||||||| ||||
Sbjct 10332688 CAGCAGCGATTGATTTTTGCAGGTA 10332664
>seq2
Length=28345163
Score = 125 bits (138), Expect = 8e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| || || ||||| || || || | || || || |
Sbjct 27365627 ATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCG 27365568
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| | || || ||||||||||| || ||||| ||||| || || |||
Sbjct 27365567 GATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCACCGGATCAG 27365508
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| || ||||| ||||| || || || | ||||| | |||||| || | || ||||||
Sbjct 27365507 CAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAAT 27365448
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| ||||| || ||||| || || | ||||||||||| ||
Sbjct 27365447 ATTCAAAAAGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGG 27365401
Score = 98.7 bits (108), Expect = 1e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| || || |||||||| || || || || | || || || || |
Sbjct 27365945 ATGCAAATCTTTGTAAAAACTCTTACCGGTAAAACGATCACATTGGAAGTGGAAGCATCT 27365886
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| | || || ||||| |||||||| || |||||||| || |||||
Sbjct 27365885 GATACCATCGAGAATGTTAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGGACCAA 27365826
Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547
||||| | || || |||||||
Sbjct 27365825 CAGCGATTGATCTTCGCTGGTA 27365804
Score = 98.7 bits (108), Expect = 1e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| | ||||| || || ||||||||||| || ||| |
Sbjct 27366802 ATGCAAATCTTCGTAAAGACATTGACCGGAAAAACGATTACTCTTGAAGTGGAGGCGTCA 27366743
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| |||| | || || || || || || ||||| || ||||| || || ||
Sbjct 27366742 GACACGATTGAAAATGTTAAAGCAAAGATACAAGATAAGGAAGGTATTCCGCCGGATCAA 27366683
Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547
||||| || |||||||||||||
Sbjct 27366682 CAGCGCCTGATTTTTGCTGGTA 27366661
Score = 89.7 bits (98), Expect = 6e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| ||||| || || ||||| || || || || || | || || || || |
Sbjct 27366465 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACAATCACATTGGAAGTGGAAGCATCT 27366406
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || | || || || || |||||||| ||||||||||| || || |||
Sbjct 27366405 GATACCATCGAGAACGTTAAAGCGAAGATCCAGGACAAAGAGGGAATTCCACCGGATCAG 27366346
Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547
||||| | ||||| |||||||
Sbjct 27366345 CAGCGATTGATTTTCGCTGGTA 27366324
>seq136
Length=9508
Score = 113 bits (124), Expect = 5e-20
Identities = 112/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| ||||| || | | | || ||||| || || ||| | || ||||| | |
Sbjct 6048 ATGCAAATTTTTGTAAAAATGTTGACAGGCAAAACAATCACTTTAGAAGTTGAAGCCTCT 6107
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | |||| | ||||| || ||||| ||||| || |||||||||||||| |||
Sbjct 6108 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 6167
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550
|| ||||| ||||||||||||| ||
Sbjct 6168 CAACGTCTTATTTTTGCTGGTATGC 6192
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/145 (74%), Gaps = 6/145 (4%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCA 27462
||||| |||||||| ||||| | ||||| || || || | |||||| || || ||||
Sbjct 4710 ATGCAGATCTTTGTAAAGACATTGACCGGAAAAACGATCATTCTTGAAGTGGAAGCGTCA 4769
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
| | | ||| ||| | || || ||||| ||||| |||||||| ||||| || ||
Sbjct 4770 G---ACACGGTTGAGAATGTTAAAGCAAAAATCCAGGATAAGGAGGGTATTCCGCCGGAA 4826
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTA 27547
|| || || ||| ||||||||||||
Sbjct 4827 CAACAACGCCTAGTTTTTGCTGGTA 4851
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570305595134880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |