Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4 129 7e-25 seq2 125 8e-24 seq136 113 5e-20 >seq4 Length=16644688 Score = 129 bits (142), Expect = 7e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || | || |||||||| ||||| |||||||| || || Sbjct 3142700 AATGCAAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAATCGTC 3142759 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| ||| ||||||||||||||||||| |||||||| || || || ||||| Sbjct 3142760 TGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCTGACCA 3142819 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 ||| || || |||||||| ||||| Sbjct 3142820 GCAACGACTTATTTTTGCAGGTAA 3142843 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||| || || ||||| | || || ||||| ||||| |||||||| || || Sbjct 10332808 ATCATGCAAATTTTCGTAAAGACTTTAACTGGTAAGACAATTACGCTTGAGGTCGAATCC 10332749 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| |||| |||| | || || || ||||||||||| || || || |||||||| Sbjct 10332748 TCGGATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAGAT 10332689 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTA 27547 |||||||| | |||||||| |||| Sbjct 10332688 CAGCAGCGATTGATTTTTGCAGGTA 10332664 >seq2 Length=28345163 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || ||||| || || || | || || || | Sbjct 27365627 ATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCG 27365568 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || || ||||||||||| || ||||| ||||| || || ||| Sbjct 27365567 GATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCACCGGATCAG 27365508 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || ||||| ||||| || || || | ||||| | |||||| || | || |||||| Sbjct 27365507 CAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAAT 27365448 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || ||||| || || | ||||||||||| || Sbjct 27365447 ATTCAAAAAGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGG 27365401 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || |||||||| || || || || | || || || || | Sbjct 27365945 ATGCAAATCTTTGTAAAAACTCTTACCGGTAAAACGATCACATTGGAAGTGGAAGCATCT 27365886 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | || || ||||| |||||||| || |||||||| || ||||| Sbjct 27365885 GATACCATCGAGAATGTTAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGGACCAA 27365826 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| | || || ||||||| Sbjct 27365825 CAGCGATTGATCTTCGCTGGTA 27365804 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | ||||| || || ||||||||||| || ||| | Sbjct 27366802 ATGCAAATCTTCGTAAAGACATTGACCGGAAAAACGATTACTCTTGAAGTGGAGGCGTCA 27366743 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || || || || || || ||||| || ||||| || || || Sbjct 27366742 GACACGATTGAAAATGTTAAAGCAAAGATACAAGATAAGGAAGGTATTCCGCCGGATCAA 27366683 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || ||||||||||||| Sbjct 27366682 CAGCGCCTGATTTTTGCTGGTA 27366661 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || ||||| || || || || || | || || || || | Sbjct 27366465 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACAATCACATTGGAAGTGGAAGCATCT 27366406 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | || || || || |||||||| ||||||||||| || || ||| Sbjct 27366405 GATACCATCGAGAACGTTAAAGCGAAGATCCAGGACAAAGAGGGAATTCCACCGGATCAG 27366346 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| | ||||| ||||||| Sbjct 27366345 CAGCGATTGATTTTCGCTGGTA 27366324 >seq136 Length=9508 Score = 113 bits (124), Expect = 5e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || | | | || ||||| || || ||| | || ||||| | | Sbjct 6048 ATGCAAATTTTTGTAAAAATGTTGACAGGCAAAACAATCACTTTAGAAGTTGAAGCCTCT 6107 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || ||||| ||||| || |||||||||||||| ||| Sbjct 6108 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 6167 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 || ||||| ||||||||||||| || Sbjct 6168 CAACGTCTTATTTTTGCTGGTATGC 6192 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCA 27462 ||||| |||||||| ||||| | ||||| || || || | |||||| || || |||| Sbjct 4710 ATGCAGATCTTTGTAAAGACATTGACCGGAAAAACGATCATTCTTGAAGTGGAAGCGTCA 4769 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | | | ||| ||| | || || ||||| ||||| |||||||| ||||| || || Sbjct 4770 G---ACACGGTTGAGAATGTTAAAGCAAAAATCCAGGATAAGGAGGGTATTCCGCCGGAA 4826 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTA 27547 || || || ||| |||||||||||| Sbjct 4827 CAACAACGCCTAGTTTTTGCTGGTA 4851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570305595134880