Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 102 7e-17 seq4 95.1 1e-14 seq136 91.5 1e-13 >seq2 Length=28345163 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || ||||| || ||||||| || | ||||||||||||||||| |||| Sbjct 27366803 CATGCAAATCTTCGTAAAGACATTGACCGGAAAAACGATTACTCTTGAAGTGGAGGCGTC 27366744 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||||| | || ||| ||| || ||||| || ||||| || || || ||||| Sbjct 27366743 AGACACGATTGAAAATGTTAAAGCAAAGATACAAGATAAGGAAGGTATTCCGCCGGATCA 27366684 Query 27107 ACAGCG 27112 |||||| Sbjct 27366683 ACAGCG 27366678 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||||||||| ||||| || | || || | ||||||||| | || Sbjct 27365945 ATGCAAATCTTTGTAAAAACTCTTACCGGTAAAACGATCACATTGGAAGTGGAAGCATCT 27365886 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| ||||| || ||||||||||| || ||||| || ||| Sbjct 27365885 GATACCATCGAGAATGTTAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGGACCAA 27365826 Query 27108 CAGCGTTTAATATACGCCGG 27127 ||||| || || | ||| || Sbjct 27365825 CAGCGATTGATCTTCGCTGG 27365806 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||||||||| || || || | || || | ||||||||| | || Sbjct 27366465 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACAATCACATTGGAAGTGGAAGCATCT 27366406 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| || || || |||||||| || || ||||| ||||| Sbjct 27366405 GATACCATCGAGAACGTTAAAGCGAAGATCCAGGACAAAGAGGGAATTCCACCGGATCAG 27366346 Query 27108 CAGCGTTTAATATACGCCGG 27127 ||||| || || | ||| || Sbjct 27366345 CAGCGATTGATTTTCGCTGG 27366326 >seq4 Length=16644688 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || ||||| ||| | || || ||| | ||||| ||||| || ||| | || Sbjct 10332806 CATGCAAATTTTCGTAAAGACTTTAACTGGTAAGACAATTACGCTTGAGGTCGAATCCTC 10332747 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || ||||||| | || ||| || ||||| ||||||||||||||||| || ||||| Sbjct 10332746 GGATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAGATCA 10332687 Query 27107 ACAGCGTTTAAT 27118 ||||| || || Sbjct 10332686 GCAGCGATTGAT 10332675 >seq136 Length=9508 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || ||||||| || | || | ||||||||||||| |||| Sbjct 4710 ATGCAGATCTTTGTAAAGACATTGACCGGAAAAACGATCATTCTTGAAGTGGAAGCGTCA 4769 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| || |||||| || ||| |||||| || || || || || || || || || ||| Sbjct 4770 GACACGGTTGAGAATGTTAAAGCAAAAATCCAGGATAAGGAGGGTATTCCGCCGGAACAA 4829 Query 27108 CAGCG 27112 || || Sbjct 4830 CAACG 4834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434914735812480