Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2 104 5e-17 seq136 93.3 1e-13 >seq2 Length=28345163 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| | || |||||||| || |||| |||||| ||||||||||| || | Sbjct 27365806 CCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 27365865 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || |||||||| ||||| ||| || || | |||||||| || || || ||| Sbjct 27365866 TTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAAGA 27365925 Query 211095 GTCTTTACAAACACCTGCAT 211114 || |||||||| | ||||| Sbjct 27365926 GTTTTTACAAAGATTTGCAT 27365945 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || ||||| || | || || || || || |||| ||| || |||||||||||||| | Sbjct 27366326 CCAGCGAAAATCAATCGCTGCTGATCCGGTGGAATTCCCTCTTTGTCCTGGATCTTCGCT 27366385 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| |||||||| ||||| ||| || || | ||||| || || || || ||| Sbjct 27366386 TTAACGTTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 27366445 Query 211095 GTCTTTACAAACACCTGCAT 211114 || |||||||| | ||||| Sbjct 27366446 GTTTTTACAAAAATTTGCAT 27366465 >seq136 Length=9508 Score = 93.3 bits (102), Expect = 1e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||||||||| || || |||| || ||||| |||||||| ||| ||| || || || Sbjct 4837 AGGCGTTGTTGTTCCGGCGGAATACCCTCCTTATCCTGGATTTTTGCTTTAACATTCTCA 4778 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 | ||||| || ||| || || ||| ||||||| ||||| || | ||||||||||| Sbjct 4777 ACCGTGTCTGACGCTTCCACTTCAAGAATGATCGTTTTTCCGGTCAATGTCTTTACAAAG 4718 Query 211107 ACCTGCATTTT 211117 | |||||| || Sbjct 4717 ATCTGCATATT 4707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159141989998010