Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq2 118 3e-21
seq4 93.3 1e-13
seq136 86.0 1e-11
>seq2
Length=28345163
Score = 118 bits (130), Expect = 3e-21
Identities = 161/222 (73%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | || || ||||| || || ||||||||||| | ||| ||||| | || ||
Sbjct 27365407 CGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTA 27365466
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || | ||| || || || ||||| |||||||| || || || ||||| ||
Sbjct 27365467 CGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCC 27365526
Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|| || || || || ||| || || ||| ||||| || || |||| ||| || || ||
Sbjct 27365527 TCTTTATCCTGAAT-TTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAA 27365585
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| ||||| ||||| |||| || |||| ||| | |||||
Sbjct 27365586 CGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627
Score = 107 bits (118), Expect = 5e-18
Identities = 110/141 (78%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
||||||||||| | ||| |||||||| || ||||| ||||| ||||| ||||| ||| ||
Sbjct 27365806 CCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGAT-TTTCGC 27365864
Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692
|| ||| |||||||| || || | |||||| || || |||||||| || || || |
Sbjct 27365865 TTTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAAG 27365924
Query 225693 AGTTTTTATGAACACTTGCAT 225713
|||||||| || | ||||||
Sbjct 27365925 AGTTTTTACAAAGATTTGCAT 27365945
Score = 105 bits (116), Expect = 2e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
||||| || || || || ||||| || ||||||||||||||||| ||||| ||||||
Sbjct 27366663 CCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTGCT 27366722
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693
|| ||| ||| || |||||||| | ||||| || | || ||||| || || |||||
Sbjct 27366723 TTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCAAT 27366782
Query 225694 GTTTTTATGAACACTTGCATTTT 225716
|| |||| ||| | |||||| ||
Sbjct 27366783 GTCTTTACGAAGATTTGCATGTT 27366805
Score = 96.9 bits (106), Expect = 8e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||||||||| ||||| || || || || ||||| || || ||||||||||||||||| ||
Sbjct 10703931 GAATATTTGCCCATCTGTGATTGAAATCACATTGGTGGGAATATAAGCAGAAACATCGCC 10703872
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575
||||| ||||| | ||| |||| ||||| | ||| ||||| |||
Sbjct 10703871 AGCTTGAGTTTCAATAACTGGTAGTGCTGTCAATGAGCCACCTCCA 10703826
>seq4
Length=16644688
Score = 93.3 bits (102), Expect = 1e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| || || || ||||||||||| ||||| || || || || ||||| || || || ||
Sbjct 3142843 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 3142784
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||||||| || || || || || | ||| || || | || ||||||||||| |||
Sbjct 3142783 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 3142724
Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716
|| ||||| | ||| | |||||||||
Sbjct 3142723 AATGTTTTCACGAATATTTGCATTTT 3142698
>seq136
Length=9508
Score = 86.0 bits (94), Expect = 1e-11
Identities = 107/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
||||| || | || |||||||| || ||||||||||| ||||| || ||||| ||||||
Sbjct 4849 CCAGCAAAAACTAGGCGTTGTTGTTCCGGCGGAATACCCTCCTTATCCTGGAT-TTTTGC 4791
Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692
|| ||| || | |||||||| | |||||| || | ||||||| || || |||||
Sbjct 4790 TTTAACATTCTCAACCGTGTCTGACGCTTCCACTTCAAGAATGATCGTTTTTCCGGTCAA 4731
Query 225693 AGTTTTTATGAACACTTGCATTTT 225716
|| |||| || | ||||| ||
Sbjct 4730 TGTCTTTACAAAGATCTGCATATT 4707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192520901747756
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |