Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2 118 3e-21 seq4 93.3 1e-13 seq136 86.0 1e-11 >seq2 Length=28345163 Score = 118 bits (130), Expect = 3e-21 Identities = 161/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || ||||| || || ||||||||||| | ||| ||||| | || || Sbjct 27365407 CGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTA 27365466 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || | ||| || || || ||||| |||||||| || || || ||||| || Sbjct 27365467 CGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCC 27365526 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || || || || || ||| || || ||| ||||| || || |||| ||| || || || Sbjct 27365527 TCTTTATCCTGAAT-TTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAA 27365585 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||| ||||| |||| || |||| ||| | ||||| Sbjct 27365586 CGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627 Score = 107 bits (118), Expect = 5e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| | ||| |||||||| || ||||| ||||| ||||| ||||| ||| || Sbjct 27365806 CCAGCGAAGATCAATCGCTGTTGGTCCGGTGGAATTCCTTCTTTGTCCTGGAT-TTTCGC 27365864 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || ||| |||||||| || || | |||||| || || |||||||| || || || | Sbjct 27365865 TTTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATCGTTTTACCGGTAAG 27365924 Query 225693 AGTTTTTATGAACACTTGCAT 225713 |||||||| || | |||||| Sbjct 27365925 AGTTTTTACAAAGATTTGCAT 27365945 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| || || || || ||||| || ||||||||||||||||| ||||| |||||| Sbjct 27366663 CCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTGCT 27366722 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||| || |||||||| | ||||| || | || ||||| || || ||||| Sbjct 27366723 TTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCAAT 27366782 Query 225694 GTTTTTATGAACACTTGCATTTT 225716 || |||| ||| | |||||| || Sbjct 27366783 GTCTTTACGAAGATTTGCATGTT 27366805 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||||||||| ||||| || || || || ||||| || || ||||||||||||||||| || Sbjct 10703931 GAATATTTGCCCATCTGTGATTGAAATCACATTGGTGGGAATATAAGCAGAAACATCGCC 10703872 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 ||||| ||||| | ||| |||| ||||| | ||| ||||| ||| Sbjct 10703871 AGCTTGAGTTTCAATAACTGGTAGTGCTGTCAATGAGCCACCTCCA 10703826 >seq4 Length=16644688 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || ||||||||||| ||||| || || || || ||||| || || || || Sbjct 3142843 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 3142784 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| || || || || || | ||| || || | || ||||||||||| ||| Sbjct 3142783 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 3142724 Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| | ||| | ||||||||| Sbjct 3142723 AATGTTTTCACGAATATTTGCATTTT 3142698 >seq136 Length=9508 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| || | || |||||||| || ||||||||||| ||||| || ||||| |||||| Sbjct 4849 CCAGCAAAAACTAGGCGTTGTTGTTCCGGCGGAATACCCTCCTTATCCTGGAT-TTTTGC 4791 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || ||| || | |||||||| | |||||| || | ||||||| || || ||||| Sbjct 4790 TTTAACATTCTCAACCGTGTCTGACGCTTCCACTTCAAGAATGATCGTTTTTCCGGTCAA 4731 Query 225693 AGTTTTTATGAACACTTGCATTTT 225716 || |||| || | ||||| || Sbjct 4730 TGTCTTTACAAAGATCTGCATATT 4707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192520901747756