Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 105 9e-18 seq2 89.7 7e-13 >seq3 Length=25485961 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77489 AAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 77548 ||| ||||| ||||| |||| || ||||| ||||| ||||| || | |||||||||||| Sbjct 17642577 AAGGATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 17642636 Query 77549 GGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCT 77608 || || ||||| || | ||||||||||| || ||||||||||| | |||||| Sbjct 17642637 AGATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCT 17642696 Query 77609 AACAACTACTTTA 77621 ||| | ||||||| Sbjct 17642697 AACCATTACTTTA 17642709 Score = 93.3 bits (102), Expect = 6e-14 Identities = 137/192 (71%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 77937 CCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCT 77996 ||||| ||| ||||| || ||||||||| || ||||| |||||||| ||| Sbjct 17643566 CCCCAGGAATCTTCCAACCCGGGGCATTCAGCAGGACACATTAATGACCATATTTTATCG 17643625 Query 77997 TCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG--- 78053 || || || | ||| || ||||| |||||||||| | ||| |||| ||| || Sbjct 17643626 TCACGTACGCGCTCCATGAAAAGATCCGGTATCCATAAACCAAAGAATAAATCACGACAA 17643685 Query 78054 -GTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGA 78112 |||||| |||| ||| ||| |||||| | || || ||||| || | |||||||| Sbjct 17643686 CGTTCTA-GTTCATCA---CCTACATTCTTCCTCAGTTCTAGAAATTCAAAAATATCAGC 17643741 Query 78113 ATGCCATGGTTC 78124 |||||||||||| Sbjct 17643742 ATGCCATGGTTC 17643753 >seq2 Length=28345163 Score = 89.7 bits (98), Expect = 7e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 77489 AAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 77548 ||| ||||| | ||| |||| || ||||| ||||| ||||| || | |||||||||||| Sbjct 24879746 AAGGATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 24879687 Query 77549 GGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCT 77608 || || | ||| || | ||||||||||| || ||||||||||| | |||| | Sbjct 24879686 AGATCGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTT 24879627 Query 77609 AACAACTACTTT 77620 ||| ||||| || Sbjct 24879626 AACCACTACCTT 24879615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694662947415360