Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq3 109 8e-19
seq2 95.1 2e-14
>seq3
Length=25485961
Score = 109 bits (120), Expect = 8e-19
Identities = 104/133 (78%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 76143
||| ||||| ||||| ||||| || ||||| ||||| ||||| || | ||||||||||||
Sbjct 17642577 AAGGATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 17642636
Query 76144 GGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCT 76203
|| ||| ||||| || | || |||||||| ||| ||||||||||| | ||||||
Sbjct 17642637 AGATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCT 17642696
Query 76204 GACAACTACTTTA 76216
|| | |||||||
Sbjct 17642697 AACCATTACTTTA 17642709
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/226 (70%), Gaps = 6/226 (3%)
Strand=Plus/Plus
Query 76497 TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGAC 76556
|||| || ||||| || || |||||| | ||||| ||| ||||| || || |
Sbjct 17643531 TTTCTTACTGTGTGTACAATTTCTCAAATGTCTTGCCCCAGGAATCTTCCAACCCGGGGC 17643590
Query 76557 ATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGAT 76616
||||| |||||||| |||||||| ||| || || || | ||| || ||||
Sbjct 17643591 ATTCAGCAGGACACATTAATGACCATATTTTATCGTCACGTACGCGCTCCATGAAAAGAT 17643650
Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCT---TCATTTCCTGTAT 76673
| |||||||||| | ||| |||| ||| || | ||||||| |||| ||| ||
Sbjct 17643651 CCGGTATCCATAAACCAAAGAATAAATCACGA---CAACGTTCTAGTTCATCACCTACAT 17643707
Query 76674 TCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTC 76719
|||| | || ||||| || || | |||||||| ||||||||||||
Sbjct 17643708 TCTTCCTCAGTTCTAGAAATTCAAAAATATCAGCATGCCATGGTTC 17643753
>seq2
Length=28345163
Score = 95.1 bits (104), Expect = 2e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 76143
||| ||||| | ||| ||||| || ||||| ||||| ||||| || | ||||||||||||
Sbjct 24879746 AAGGATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 24879687
Query 76144 GGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCT 76203
|| ||| | ||| || | || |||||||| ||| ||||||||||| | |||| |
Sbjct 24879686 AGATCGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTT 24879627
Query 76204 GACAACTACTTT 76215
|| ||||| ||
Sbjct 24879626 AACCACTACCTT 24879615
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712928393527680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |