Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3 109 8e-19 seq2 95.1 2e-14 >seq3 Length=25485961 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 76143 ||| ||||| ||||| ||||| || ||||| ||||| ||||| || | |||||||||||| Sbjct 17642577 AAGGATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 17642636 Query 76144 GGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCT 76203 || ||| ||||| || | || |||||||| ||| ||||||||||| | |||||| Sbjct 17642637 AGATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCT 17642696 Query 76204 GACAACTACTTTA 76216 || | ||||||| Sbjct 17642697 AACCATTACTTTA 17642709 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 76497 TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGAC 76556 |||| || ||||| || || |||||| | ||||| ||| ||||| || || | Sbjct 17643531 TTTCTTACTGTGTGTACAATTTCTCAAATGTCTTGCCCCAGGAATCTTCCAACCCGGGGC 17643590 Query 76557 ATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGAT 76616 ||||| |||||||| |||||||| ||| || || || | ||| || |||| Sbjct 17643591 ATTCAGCAGGACACATTAATGACCATATTTTATCGTCACGTACGCGCTCCATGAAAAGAT 17643650 Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCT---TCATTTCCTGTAT 76673 | |||||||||| | ||| |||| ||| || | ||||||| |||| ||| || Sbjct 17643651 CCGGTATCCATAAACCAAAGAATAAATCACGA---CAACGTTCTAGTTCATCACCTACAT 17643707 Query 76674 TCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTC 76719 |||| | || ||||| || || | |||||||| |||||||||||| Sbjct 17643708 TCTTCCTCAGTTCTAGAAATTCAAAAATATCAGCATGCCATGGTTC 17643753 >seq2 Length=28345163 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 76143 ||| ||||| | ||| ||||| || ||||| ||||| ||||| || | |||||||||||| Sbjct 24879746 AAGGATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 24879687 Query 76144 GGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCT 76203 || ||| | ||| || | || |||||||| ||| ||||||||||| | |||| | Sbjct 24879686 AGATCGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTT 24879627 Query 76204 GACAACTACTTT 76215 || ||||| || Sbjct 24879626 AACCACTACCTT 24879615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712928393527680