Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2 149 1e-30 seq136 109 1e-18 >seq2 Length=28345163 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || ||||| ||||| || | ||| ||||||||| || || || || | Sbjct 27365401 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGAC 27365460 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || || ||||| | ||||| ||||||||||| | ||||| || || ||| Sbjct 27365461 AGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGA 27365520 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| || || || || || |||||||| | |||||||| ||||| ||||| ||| Sbjct 27365521 ATGCCCTCTTTATCCTGAATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTACT 27365580 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || ||||| || || |||| ||||| ||||| |||||||| Sbjct 27365581 TCCAACGTTATCGTTTTGCCAGTCAGTGTCTTTACGAAAATCTGCAT 27365627 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||| || ||||| || ||||||||| ||||| ||||| ||||||||| Sbjct 27366663 CCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTTTGCT 27366722 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || ||||| || || || ||||| ||||| ||||| || || ||||| Sbjct 27366723 TTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCAAT 27366782 Query 283080 GTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| || ||||| || Sbjct 27366783 GTCTTTACGAAGATTTGCATGTT 27366805 >seq136 Length=9508 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATA 283034 |||||||| || ||||||||||||||| || ||||| |||||||| || | || | Sbjct 4834 CGTTGTTGTTCCGGCGGAATACCCTCCTTATCCTGGATTTTTGCTTTAACATTCTCAACC 4775 Query 283035 GTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATC 283094 ||||| || ||||| ||||| ||| ||||||| || || ||||| ||||| || || ||| Sbjct 4774 GTGTCTGACGCTTCCACTTCAAGAATGATCGTTTTTCCGGTCAATGTCTTTACAAAGATC 4715 Query 283095 TGCATTTT 283102 ||||| || Sbjct 4714 TGCATATT 4707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046730160752796