Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28]
674 sequences; 96,340,582 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq4 96.9 2e-15
seq2 89.7 4e-13
>seq4
Length=16644688
Score = 96.9 bits (106), Expect = 2e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257
|| ||||| ||||| ||||||||||||| ||| | ||||| || ||| ||||||
Sbjct 10332666 CCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTCGCT 10332725
Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317
|| | || | || || || | |||||| ||||| | |||||| ||||| || || |
Sbjct 10332726 TTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGCGTAATTGTCTTACCAGTTAAA 10332785
Query 44318 GTCTTCACGAAGATTTGCATGAT 44340
||||| ||||| |||||||||||
Sbjct 10332786 GTCTTTACGAAAATTTGCATGAT 10332808
>seq2
Length=28345163
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||||||||| || ||||| || || ||||| | || || |||| |||
Sbjct 27365419 ACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCC 27365478
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| ||| || ||||||||||| | || |||||||| | || | || || || ||| |
Sbjct 27365479 AACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCTTTATCC-TG 27365537
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
| || |||| | ||| | || || || | || ||| || |||| ||| ||||| ||
Sbjct 27365538 AATTTTGGCTTTTACATTCTCGATAGTATCCGAGGCTTCTACTTCCAACGTTATCGTTTT 27365597
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| || || ||||| ||||| || ||||||
Sbjct 27365598 GCCAGTCAGTGTCTTTACGAAAATCTGCATG 27365628
Score = 82.4 bits (90), Expect = 5e-11
Identities = 105/142 (74%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257
|| ||||| |||| ||||| ||||| | || | ||||||||| || |||||| |||
Sbjct 27366663 CCAGCAAAAATCAGGCGCTGTTGATCCGGCGGAATACCTTCCTTATCTTGTATCTT-TGC 27366721
Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316
|| || || | || ||||| | | ||||| || | |||||||| ||||| || |
Sbjct 27366722 TTTAACATTTTCAATCGTGTCTGACGCCTCCACTTCAAGAGTAATCGTTTTTCCGGTCAA 27366781
Query 44317 GGTCTTCACGAAGATTTGCATG 44338
||||| |||||||||||||||
Sbjct 27366782 TGTCTTTACGAAGATTTGCATG 27366803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359987442903858
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |